Wenzhouxiangella marina: WM2015_1893
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Entry
WM2015_1893 CDS
T04011
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
wma
Wenzhouxiangella marina
Pathway
wma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WM2015_1893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wma03019
]
WM2015_1893
Enzymes [BR:
wma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WM2015_1893
Messenger RNA biogenesis [BR:
wma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WM2015_1893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AKS42259
UniProt:
A0A0K0XX40
LinkDB
All DBs
Position
2262584..2263879
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AA seq
431 aa
AA seq
DB search
MSDNPTSEVVLTDTRFDSFDLDERMLKGLNEAGFERCTPIQAETLPLALKGSDVAGQART
GTGKTAAFLLAIFKRLLSPDSQGPGPNPRAICIAPTRELAIQIHRDAELLGKHTGLRFLL
AYGGVDYAKQRDEIAEGVDVLIGTPGRLIDYLKQDIYNLKHIEVAVLDEADRMFDLGFIT
DIRFLFRRMTPVGKRQTLMFSATFPLKVTELAYEHMNEVETVRIEEEQMTTDRVTQVVYY
PANREKLPLLVQLLADKEDKHIMVFVNTRHAADRVARVLKANGFDAAMLAGNVPQAKRQK
LLKRFHDGELAVLVATDVAARGLHIPDVSHVFNYDLPQDAADYVHRIGRTARLGATGDAI
SFACEDYAFHLPEIEEYIGMSLPVMQHDPDSLPELKKAPPRKKSPDDGKSRGGGGRGRSR
RRRSGKPPAQA
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacaatccgacctccgaagtcgtcctgacagacacccgcttcgactccttcgat
ctcgacgaacgcatgctcaaaggcctgaacgaagccggcttcgagcgctgcacaccgatt
caggccgagaccctgcccctggccctcaagggcagcgacgtggccggccaggctcgcacc
ggcaccggcaagacggcggccttcctgctcgccatcttcaagcgcctgctctcaccggac
tcgcagggcccgggccccaatccccgcgcgatctgcatcgcaccgacgcgcgagctggcg
atccagatccaccgcgatgcggaactgctcggcaagcacacgggcttgcgcttcctgctc
gcctacggcggcgtcgactacgccaagcagcgcgacgagatcgccgagggcgtggacgtc
ctgatcggcaccccggggcgcctgatcgactatttgaaacaggacatctacaacctcaag
cacatcgaggtcgcggtgctggacgaagccgaccgcatgttcgatctgggcttcatcacc
gacatccgcttcctgttccgccgcatgacgccggtcggaaagcgccagaccctgatgttc
tccgccaccttcccgctgaaggtgaccgagctggcctacgaacacatgaacgaggtcgag
acggtccgcatcgaagaagagcagatgaccaccgaccgcgtgacccaggtggtctactac
ccggccaatcgggagaagctgccgctactcgtccagctgctggccgacaaggaagacaag
cacatcatggtcttcgtgaacacccgccacgccgccgatcgggtcgcccgggtgctcaag
gccaacggcttcgacgccgccatgctggccggcaacgtgccccaggccaagcgtcagaag
ctgctcaagcgcttccacgacggcgagctggcggtactggtcgcgacggacgtggcggct
cgcggcctgcacatcccggacgtcagccacgtcttcaactacgacctgccccaggacgcc
gctgactacgtccaccgcatcggccggaccgcccgactcggtgccaccggggatgcgatc
agcttcgcctgcgaggactacgccttccatctgccggagatcgaggaatacatcggcatg
tccctgccggtgatgcagcacgatccggacagcctgccggagctgaagaaggcgccgccg
cgcaagaagagcccggacgacggcaaatccagaggtggcggtggccgcggacggtcccgc
cgtcggcgcagcggaaagccacccgctcaggcctga
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