Wenzhouxiangella marina: WM2015_2302
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Entry
WM2015_2302 CDS
T04011
Name
(GenBank) DNA-directed RNA polymerase subunit beta''''
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
wma
Wenzhouxiangella marina
Pathway
wma03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
wma00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WM2015_2302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wma03021
]
WM2015_2302
03400 DNA repair and recombination proteins [BR:
wma03400
]
WM2015_2302
Enzymes [BR:
wma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WM2015_2302
Transcription machinery [BR:
wma03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WM2015_2302
DNA repair and recombination proteins [BR:
wma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WM2015_2302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AKS42665
UniProt:
A0A0K0XYB7
LinkDB
All DBs
Position
complement(2720994..2725205)
Genome browser
AA seq
1403 aa
AA seq
DB search
MRDLFNLYKRQNQITDFDAIRIGLAPPELIRSWSFGEVKKPETINYRTFKPEREGLFCAA
IFGPIKDYECLCGKYKRMKHRGVKCEKCGTEVTLTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYFESYLVLDPGMTPLERGQLLTDEQYFEAVEEYGDEFEAKM
GAEAVFDLLKNIDLNGELNQLREDIAATNSETKIKRLTKRIKLMEAFIESGNRPEYMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHECGLPKKMALELFKPFIFSKLQRRGLAMTIKAAKKLVEREEGEVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSSNNILSPANGEPIIVPTQDVVLGLYYMTRHLPGAKGEGMFFSSVGEVHRAYANR
QVELQAAVTVRIRELQIDEEGNRTEVVSRQETTVGRALLWEIVPKGMPFSAINQVLKKKQ
ISKLIDECYRTLGLKQTVVFADQLMYTGFAYSTRAGVSIGLDDLQVPPEKKEILERAEKE
ILDIQNQYASGVVTAGERYNKVVDIWSRTNEEVARAMMKRIGKETRVDIDGNEVEEDSMN
SIFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEEDCGTEQGLEMLPIVEGGDVVEPLRERIL
GRVVAENVYKADSDDVLCPRGTLLDEKWVNELEANGVDRVLVRSPITCETKHGICAECYG
RDLARGTLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSVAIDHIEVKSAGSVRF
YNLKSVENAEGKLVAVSRSGELSVIDSHGRERERYKIPYGAILSVKEGDKVDIGQNVANW
DPHTHPIVSEVAGIASFQDFIGGVTVTEEIDDITGLSSMVVTDPKKRGSEGKDLRPIIRL
LDKKGKPLNIPNTEQLAQYFLPAGAVINATDGQEIRVGDIIARIPQESSKTRDITGGLPR
VADLFEARKPKEGAILAEASGVVSFGKETKGKQRLVITDENGEAHEELIPKWRQVLVFEG
EHVEKGETVVDGEPNPHDILRLLGVERLADYLVQEIQDVYRLQGVKINDKHIEVIIRQML
RKVEVLDAGDSKFLRGEQVDQIRVQEENERLEADGLQPCRYLNVLLGITKASLATESFIS
AASFQETTRVLTDAAVRGTVDNLRGLKENVIVGRLIPAGTGRVAMARRKAQRDAHQDTEA
ELAALLRASEAEQTESTTAGDAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgacctgttcaatctctacaagcgtcagaatcagatcaccgatttcgacgccatt
cgcatcggactggctccgccggagctgatccgctcctggtcctttggtgaggtcaagaag
cccgagaccatcaactaccgcaccttcaagcccgagcgtgagggcctgttctgtgccgcg
atcttcggtccgatcaaggactacgaatgcctctgcggcaagtacaagcgcatgaagcac
cgcggcgtgaagtgcgagaagtgcggcaccgaagtcactctgaccaaggtccgccgtgag
cgcatgggtcacatcgatctggcctcgccggtggcgcacatctggttcctgaagtcgctg
ccgagccgcatcggcctgatgctggacatgaccctgcgcgacatcgagcgcatcctgtac
ttcgagtcctacctggtgctcgatccgggcatgacgccgctcgagcgcggtcagctcctg
accgacgagcagtatttcgaggcggtcgaggagtacggtgacgagttcgaagccaagatg
ggtgccgaggcggtcttcgacctgctgaagaacatcgatctgaatggcgagctgaaccag
ctgcgcgaagacatcgcggcgaccaactccgagaccaagatcaagcgcctgaccaagcgg
atcaagctgatggaggcgttcatcgagtcgggcaaccgtcccgagtacatgatcctgacg
gtgctgccggtgctgccacccgatctgcgcccgctggtgccgctcgacggtggtcgtttc
gcgacttcggatctgaacgatctgtaccgccgcgtgatcaaccgcaacaaccgtctgcgt
cgtctgctggacctgaacgccccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatccgtcgatgccctgctggacaacggccgccgtggtcgtgccatcacgggcacgaac
aagcgaccgctgaagtccctggccgacatgatcaagggcaagcagggtcgcttccgtcag
aacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggtccgacg
ctgaagctgcacgagtgcgggttgccgaagaagatggccctggagctgttcaagcccttc
atcttctccaagctgcagcgtcgtggcctggccatgaccatcaaggcggccaagaagctc
gtcgagcgcgaggaaggcgaggtctgggacattctcgaggaagtcatccgcgagcacccg
gtcatgctgaaccgtgcgccgacccttcaccgtctcggcatccaggccttcgagccggtg
ctgatcgagggcaaggccatccagctgcacccgctggtctgtaccgccttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtgccgctgagcctcgaggcccagctggaagcc
cgtgccctgatgatgtcgtcgaacaacatcctgtcgccggccaacggtgagccgatcatc
gtcccgacccaggacgtggtgctgggtctgtactacatgacccgtcacctgccgggcgcg
aagggcgagggcatgttcttctccagcgtcggcgaagtgcatcgtgcctacgccaaccgc
caggtcgagttgcaggccgccgtcacggtccgcatccgcgagctgcagatcgacgaggag
ggcaacaggaccgaagtcgtcagccgccaggaaacgaccgtcggtcgagccctgctgtgg
gagatcgtgcccaagggcatgcccttctcggccatcaaccaggtgctgaagaagaagcag
atctccaagctcatcgacgagtgctaccgtaccctgggtctcaagcagaccgtggtcttc
gccgaccagctgatgtacaccggcttcgcctattccacgcgtgccggcgtctcgatcggc
ctcgacgaccttcaggttccgcccgagaagaaggaaatcctcgagcgtgccgagaaggaa
atcctcgacatccagaaccagtatgcgtcgggtgtcgtgaccgccggcgagcgctacaac
aaggtggtcgacatctggtcgcgcacgaacgaagaagtcgcgcgcgccatgatgaagcgc
atcggcaaggaaacccgcgtcgacatcgacggcaacgaggtcgaagaagattcgatgaac
tcgatcttcatcatggccgactccggggcccgtggttccgccgcccagatccgtcagctg
gccgggatgcgaggcctgatggccaagccggacggctcgatcatcgaaacgcccatcacc
gccaacttccgtgaaggtctgaacgtactccagtacttcatctccacccacggtgcccgt
aagggtctggccgatacggcgctgaagaccgccaactccggttacctgacccgtcgtctc
gtcgacgtggcccaggacctggtcgtcatcgaagaggattgcggcaccgagcagggtctc
gaaatgctgccgatcgttgaaggtggtgacgtggtcgagccgctgcgcgagcgtatcctc
ggtcgcgtcgtggccgagaacgtgtacaaggccgacagcgacgacgtgctctgcccgcgc
ggcaccctgctcgacgagaagtgggtcaacgagctcgaagccaacggcgtcgaccgcgtg
ctggtccgttcgccgatcacctgcgaaaccaagcacggcatctgcgccgagtgctacggt
cgcgacctggctcgcggcaccctggtcaaccagggcgaggccgtgggcgtcatcgctgcc
cagtcgatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgcc
gcatcgcgttccgtcgcgatcgaccacatcgaagtgaagtccgccggttccgtccgcttc
tacaacctgaagtcggtcgagaacgccgaaggcaagctggtcgccgtgtcccgctccggc
gagctgtcggtgatcgacagccacggccgtgagcgtgagcgctacaagatcccgtacggt
gcgatcctgagcgtcaaggaaggcgacaaggtcgacatcggccagaacgtggccaactgg
gatccgcacacccacccgatcgtctcggaagtggccggtatcgccagcttccaggacttc
atcggcggcgtgaccgtgaccgaagagatcgatgacatcacgggcctgagctcgatggtc
gtcaccgatccgaagaagcgcggcagcgaaggcaaggacctgcgtccgatcattcgcctg
ctggacaagaagggcaagccgctcaatatcccgaacaccgagcagttggcccagtacttc
ctgccggccggggccgtgatcaacgccaccgatggccaggaaatccgcgtcggtgacatc
atcgcgcgtattccgcaggagtcgtccaagacccgtgacatcaccggtggtctgccgcga
gtcgccgacctgttcgaagcccgcaagcccaaggaaggcgccatcctggccgaagcctcg
ggtgtggtcagcttcggcaaggagaccaagggcaagcagcgtctggtcatcaccgacgag
aacggcgaagcccacgaggagctgattccgaagtggcgtcaggtgctggtcttcgaaggt
gagcacgtggagaagggcgaaaccgtcgtcgacggcgagccgaacccgcatgacatcctg
cgcctgctgggcgtggagcgtctggccgactacctggtccaggagattcaggacgtctac
cgactgcagggcgtgaagatcaacgacaagcacatcgaggtgatcattcgccagatgctg
cgcaaggtcgaagtgctcgatgcgggcgacagcaagttccttcgtggcgagcaggtcgac
cagatccgcgtccaggaagagaacgagcgtctcgaagccgacggcctgcagccctgccgt
tacctgaacgtgctgctgggcatcaccaaggcctcgctggcgaccgagtcgttcatctcg
gcggcgtccttccaggagaccacgcgcgtactgaccgacgcggccgttcgcggcaccgtc
gacaacctgcgcggtctgaaggaaaacgtcatcgtgggtcgtctgatcccggccggtacc
ggtcgcgtggccatggctcgccgcaaggcccagcgcgacgcgcaccaggacacggaagcc
gagctggccgcactgctccgcgcctccgaagccgagcagaccgaaagcaccaccgccggc
gacgccgagtaa
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