Winkia neuii subsp. anitrata: PIG85_01865
Help
Entry
PIG85_01865 CDS
T08771
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
wne
Winkia neuii subsp. anitrata
Brite
KEGG Orthology (KO) [BR:
wne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wne03019
]
PIG85_01865 (hrpB)
Enzymes [BR:
wne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PIG85_01865 (hrpB)
Messenger RNA biogenesis [BR:
wne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PIG85_01865 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
AAA_19
AAA_22
AAA_30
AAA_11
DUF3301
ResIII
Motif
Other DBs
NCBI-ProteinID:
WCE46415
LinkDB
All DBs
Position
385407..387890
Genome browser
AA seq
827 aa
AA seq
DB search
MRSIEEINQAAGGLPAYAVLAPLAVALAKDGAAVVSAPPGTGKTTLIPPALAATVPGRVI
VTQPRRLAARAGAHRLASLLGEKVGHQVGLTVRGESKLSAHTKVEFVTTGVFIRRAIADP
ELAGVGAVVLDEVHERHTDTDLAVGICHDIAQLREDFQVVAMSATLDADRFSATLGGVEE
VAIDAESYPLQIDYQPGKMQRLTDRGTNPDFLAYAGRAAASALEKDEGQVALLFLPGLRD
LEIAAQAARAACPDMDVRLLHGRLSGAEQDSILALPQKGKRLVCTTNVAESSITVPGVRL
VVDAGLERVATFDVSRQMTGLVTNYSSKASSTQRAGRAGRLGPGRVIRLFSKVEWARMRS
HSLPEVETSDLAQLLLLLAAWGAPRARGMALPSPLPEAASDRAENTLRTLGAVDERGTIT
AFGRQLARIPADPRLGRALLEGGKRFGPARAGALLATLSSDERDAGADLPALHRRLKRQC
PPRWKADAKRFAQMAPTEQSPTSASLEAEMVALAYPGRIARRRGNSDEYLLAQGNGAALP
KGSPLQGQTWLAVADLTKASPTNIIRLAAELTEADALRLGEPLKNTSVTVHFEDGKVRAE
ETVTLGHIELSARPVPARGEAVAEAVRAEFARQGARLFTWSKKGENLRRRLLLLHRTLGA
PWPDTSMEGLGKNELFAAPLLAQLEKGASVPQLSPTSALQGILPWPEAAKLDELVPERLQ
VPSGSTVALEYLEDGAPPRLSVKLQACFGWEQNPTVVDGRVPVQLSLLSPAGRPLALTQD
LESFWKNAYPGVRAEMRGRYPKHPWPEDPTTAQATMKTKKALAHKKS
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
gtgcgttccatagaggaaataaatcaggctgcgggcgggctgcccgcctacgctgtgcta
gccccgctggctgtcgcgctcgctaaagatggggcggctgtagtttcagcaccgcccgga
accggaaagaccactctgattccgcccgcccttgcggcaacggtgccaggacgcgtcata
gtcacccaacctaggcggctggctgcccgcgccggcgcccaccgcctggccagtctgctg
ggcgaaaaagttggccaccaagtaggactcactgtgcggggcgaatccaaactaagtgcg
cacaccaaagtcgaatttgtaaccaccggggtattcatccgcagggccattgccgatccc
gaactagcgggagttggcgccgtagtactagatgaggtacacgaacgccacaccgacact
gacctggcagtggggatctgccacgacattgctcaactgcgcgaggacttccaggtggtt
gccatgtccgcaaccctagatgcggacagattctccgccactctgggtggggtagaagaa
gttgccatcgacgccgaatcctacccgctccagatcgactaccagccaggcaagatgcaa
cggctaactgaccggggcacaaacccggattttcttgcctacgcgggcagggcagccgcc
tccgccctcgaaaaggatgaggggcaagtagcgttgctattcctccccggactacgcgac
ctggaaattgctgcccaagccgcgcgcgccgcctgcccggacatggacgtcagattgcta
cacggacgcctgagcggagccgagcaagacagcatcctcgccctgcctcagaagggcaaa
cgcctagtctgtaccaccaatgtggcagaatcatccatcacagtgccaggggtgcgccta
gtagtagacgcgggcctggaacgagtggccacctttgacgtctcccgccaaatgaccggc
ctggtcactaactattcttcaaaagcctcctcgacccagcgggcaggtcgcgccggccgc
ctcggtcccggccgcgtcatcagactgttctccaaagtcgaatgggctcgcatgcgctcc
cattccttgccagaggtcgaaacctctgacctagcccaattgctcctgctgctggcggcg
tggggggctccgcgcgctcgcgggatggcgcttccctcgccactgcccgaagctgctagt
gaccgagcagagaatacactgcgaactctgggagcggtagacgagcgcgggacgatcact
gccttcggtcgccagctggctcgcatccccgctgatccgcgccttgggcgtgcccttttg
gaagggggcaaaaggtttggtcctgcccgcgccggggcgctgttggccactctcagctct
gacgaacgcgatgcgggagctgatctgcccgcgctgcacaggcggctcaagcggcagtgc
ccaccgcggtggaaggcggatgcgaagcgtttcgcgcagatggcccccaccgagcaaagt
cccactagcgcaagcttagaagccgaaatggtagcgttggcctaccctggcaggatcgct
cgccgtcgcggtaattccgacgaatatttgctggcccaaggcaacggcgccgccctcccg
aaaggctcgccgctgcaaggacaaacctggctggcggtagccgacctgaccaaggctagc
cctacaaacatcatccgcctggcggccgaattaactgaggcggacgcgttgcgtctggga
gagccgctgaaaaatacctccgtgaccgtgcactttgaggacggcaaggtacgtgccgaa
gagacggtgacgttggggcacatcgaactctcggcaaggccggtgcctgctcggggcgag
gccgtagccgaggccgttcgcgcagaattcgcccgccagggagcccgccttttcacctgg
tcgaagaaaggcgagaacctgcgccgccgcctgctattgctgcaccgcactttgggtgct
ccctggcccgacacctcaatggaggggttagggaagaacgaactattcgccgcccctttg
cttgcccagctagaaaaaggggcgagcgtaccgcaactgtcgccaacctcggccttgcag
ggtattttgccgtggccggaagcagccaaactagacgagctcgtccccgaacgcctgcaa
gtgccttcgggaagcaccgtcgccctcgaatatttagaggacggcgccccaccccgactt
tcagtgaagctgcaagcatgttttgggtgggagcaaaatcccaccgttgtagatgggcgt
gtgcccgtacagctgtccttactgtctccagctgggcggccgctggcactaacccaggat
ttggaatcattctggaagaatgcctatccgggggtgcgtgccgaaatgcggggccgctac
ccgaaacacccctggccggaggatcccactacggcgcaggcaacgatgaaaaccaagaag
gcgcttgctcataaaaaatcttaa
DBGET
integrated database retrieval system
