Winkia neuii subsp. anitrata: PIG85_05670
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Entry
PIG85_05670 CDS
T08771
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
wne
Winkia neuii subsp. anitrata
Pathway
wne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PIG85_05670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wne03019
]
PIG85_05670
03009 Ribosome biogenesis [BR:
wne03009
]
PIG85_05670
Enzymes [BR:
wne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PIG85_05670
Messenger RNA biogenesis [BR:
wne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PIG85_05670
Ribosome biogenesis [BR:
wne03009
]
Prokaryotic type
rRNA helicases
PIG85_05670
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEAT_Nup120
CMS1
ERCC3_RAD25_C
adh_short
Motif
Other DBs
NCBI-ProteinID:
WCE45166
UniProt:
A0AB38XLF0
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All DBs
Position
1199117..1200847
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AA seq
576 aa
AA seq
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MTSKTFADLSLPSYLLEAVQKLGFENPTPIQEAAIPALLAKQDVVGIAQTGTGKTAAFGL
PLLAHVDGEGVQALVLAPTRELALQSASAIGAFASAAKDTNVVAVYGGSPYGPQIGAIKA
GAQVVVGTPGRVIDLIEKGALDLSGVRFFVLDEADEMLRMGFAEDVETIAGSVPDDSVTA
LFSATMPPAIKKVAQTHLNDPVEISIARQSTTVSTVHQTYAVVPFKFKNVALARVLSTMD
SGATIVFVRTRLDAEEVANDMTARGFRTAAISGDVAQAERERIVERLRNGTLDVLVATDV
AARGLDVERIELVVNFDVPRQDEAYVHRIGRTGRAGREGTALSFFTPRERGKLRQIEKLT
GTKMEAVRVPSPQQVRTHKAHQILDKLPERIASKGLELYFGLIEELAEEQGMYIADIAAA
LLALAVGDTASSKEDIRSRSGHSPRIRREEFVDEDGEFLYAVFEEGRDSGKDKRGRSAKG
RREGGSRRNGHAPMRGAKRYRVEVGRRDGVKPGSIVGAITGESDLRGKDLGRIEIFPSFS
LVEIAGGISGTEAKRIGKAKVAGRALRIREDRGPKH
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaaaaacctttgctgatctttccctgccctcctatcttctagaagctgtacag
aaactaggcttcgaaaatcccactcctatccaggaagcggcaattcccgccctcttggct
aagcaggacgtagtcggcattgcgcaaaccggtacgggcaagactgcggcttttgggctg
ccgctgcttgcccatgtagatggcgagggcgtacaggccctggtgctagcccccacccgt
gagctcgcgctgcaatccgcatctgcaattggcgctttcgcctccgcagcgaaagacaca
aacgtggttgccgtctatggcggtagcccctacggtccacaaatcggcgctattaaggcc
ggtgcgcaggtagtcgttggtactcccggccgcgtcatcgatctgattgaaaagggtgct
ttagacctttctggcgtacgtttcttcgtcctagacgaggccgacgaaatgctgcgcatg
ggctttgctgaagatgtggaaaccattgccggctcagtgcccgatgattcggtaactgcc
ctcttctcggctaccatgcctcccgccattaagaaggtcgcacagacccatctaaatgat
ccggtagagatctctattgcccgccagtccaccactgtctcgactgtgcaccagacctac
gcggtagttcctttcaaattcaagaacgtggcgctcgcccgggtcctttcaaccatggat
tcgggagcaactattgtcttcgttcgcactcgtctggacgctgaagaagtagcaaatgac
atgacggcgcgtggttttcgtaccgcagccatctctggagatgttgcccaggccgaacgt
gaacgtattgtcgaaaggcttcgcaatggcacgcttgacgtcctagttgccactgacgtg
gctgcgcgcggcctagacgtggaacgcatcgagctcgtagtcaatttcgatgttcctcgc
caagacgaagcttatgttcaccggattggcaggacgggtcgcgctggccgcgaaggaacc
gctctgtccttctttacgccgcgcgaacgaggcaagctccgccaaatcgaaaagcttacc
ggcaccaagatggaagccgttcgcgttccttcgccgcagcaggtacgcacccacaaggcg
caccaaattttggataagttgcccgagcgaattgcctctaagggactcgagctgtacttc
ggacttatcgaggaactggcggaagagcagggaatgtacattgccgacattgctgcagcc
ctactcgccctcgctgtgggcgacaccgcctcctctaaagaggatattcgcagtcgttct
ggccattcgcctcggattcgtcgcgaagaatttgtcgatgaagacggcgagttcctctac
gccgttttcgaagaaggccgtgactctggcaaagacaagcgtggccgctccgccaagggt
aggcgcgagggcggatcacgccgcaacgggcatgcgccaatgcgcggggccaagcgctac
cgtgtggaggtcggccgccgggacggggttaagccaggatcgatcgtaggagcaataacc
ggcgaatctgatctgcgcggcaaggatctggggagaatcgaaatcttcccctccttctcg
ttagttgagatcgctggcggcatctctgggaccgaggcgaagcgcatcggcaaggccaag
gttgccggtcgagccctgcgcattcgtgaggaccgcggtcctaagcactaa
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