Woeseia oceani: BA177_10760
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Entry
BA177_10760 CDS
T04427
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
woc
Woeseia oceani
Pathway
woc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
woc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BA177_10760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
woc03019
]
BA177_10760
03016 Transfer RNA biogenesis [BR:
woc03016
]
BA177_10760
Enzymes [BR:
woc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BA177_10760
Messenger RNA biogenesis [BR:
woc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BA177_10760
Transfer RNA biogenesis [BR:
woc03016
]
Prokaryotic type
tRNA degradation factors
BA177_10760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
ANO51618
UniProt:
A0A193LGN2
LinkDB
All DBs
Position
complement(2388320..2390545)
Genome browser
AA seq
741 aa
AA seq
DB search
MSKKAKTNDDAKGGKKYQHPLPDRNAVLEYLREVGKPRPADAILKDFNLKGQRMRALLVE
KLDKMVRAGQIIENRRGEYCLTEKLQLVAGTVIGHADGFGFMRRDDGADDVYLSAREMQR
LFDGDRAVVKVTGKDRRGREEGRVVEVLERGFRETAGQFIRERGIGIVIPDNPKIAHRIL
VPAGEDGSAKHGQIVVAEILDYPSGNEQATGRVVRVLGAPDKKGIATDLAIHAHSIPNVW
PKNVTDQAGKFGSSVPAAAKKGREDLRDIPLLTIDGADARDFDDAVYCEPSGKGWRLLVA
IADVAHYVDVHSPLDKEAIRRGTSVYFADRVVPMLPEALSNGLCSLNPKVDRLCMVCEMR
VGADGKVSKSRFFEGLMRSHARLTYTEVSGFLSGETPKSVPAVVHEPIQHLHDLYQAFAN
NRNRRGAIELDIPQARIELGDDGTVEKIITVPRNDAHRLIEECMIAANVQAAKFLRKHKI
AGLYRVHAKPDPERFEDLRQYLLSLGLQVPHPDHVEPRQFNKLLQQVKDRPDSQAISMAM
LRSLKHAEYTPENIGHFGLALDAYAHFTSPIRRYPDLLVHRAIRHIVRGGKAGNHDYDRA
AMDHLGQVCSAHERCAEDATREVEAWLKCEFMEDKVGETFAGVITGVTNFGVFVQLSEFQ
IDGLVHVTSLKNDYYQFDASRLELVGDRGGKRYRLGDAMSVQVQRVDMESKRIDFRPMED
ESEPQTGRKRAGSGSKRRSKR
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaaaaaagccaagaccaatgatgacgccaagggaggcaagaagtaccagcatcct
ttgccggaccgcaatgccgtgctggagtatctccgggaggttggcaagccgcgcccggcc
gatgcgattctcaaagacttcaacctgaaagggcagcgcatgcgtgcgctgttggtcgaa
aaactggacaaaatggtacgggctggccagatcatcgagaaccgtcgtggtgagtactgc
ctcaccgagaaactgcaattggttgcgggcaccgttatcggccacgcagacggcttcggc
ttcatgcggcgagacgatggcgcggacgacgtgtacttgtccgcgcgcgaaatgcaacga
ttgttcgacggcgaccgggctgtggtcaaagttaccggcaaggaccgacgcggccgcgag
gaaggccgggtagtcgaagtgctcgagcgcggctttcgcgaaacggcgggtcagtttata
cgcgagcggggaatcggaatcgtcattcccgacaacccgaagatcgcccatcgtattctc
gttcccgcgggcgaagacggttcggcgaaacatggccagatcgtggttgccgaaattctg
gattacccgagtggcaacgaacaggcaacgggacgagtcgtccgtgtcctcggcgcgccc
gacaaaaaggggatcgccaccgatcttgctattcacgcacacagcatcccgaacgtgtgg
ccgaaaaacgttaccgatcaggccgggaagtttggcagcagcgtacccgcagctgccaag
aagggccgcgaggatttgcgcgatattccgctgctcaccattgacggcgctgatgcccgg
gactttgatgatgcggtctattgcgagccatccggcaagggttggcgtctgctggtggcc
attgctgacgtcgcgcactacgttgacgtgcattcgccgctggacaaggaagcgattcga
cgcggtacctcagtgtattttgcagaccgtgttgtgccgatgctgccggaggcgctttct
aacggcctgtgttccctcaacccgaaggtagacaggctgtgcatggtctgcgaaatgcgg
gtgggtgcagacggcaaagtttcaaaatcccgctttttcgaagggctcatgcgttctcat
gcgcgccttacttataccgaggtcagcggttttcttagcggcgaaacgcccaagtcggtt
cccgcggtcgtgcatgaaccgatacagcacctgcacgatctgtaccaagcgtttgccaat
aatcgcaatcgccgaggtgcgatagagcttgatattccacaggcgcgcatcgaactcggt
gacgatggcacggtggaaaaaattattacggtgccgcgcaatgatgcgcatcgtctgatc
gaagagtgcatgatcgcggccaatgttcaggcagcaaagtttttgcgcaaacacaagatt
gccggactgtatcgtgtacacgcgaaacccgatcccgaacgcttcgaagatcttcgccag
tacctgttgagtctggggttacaggtgccgcacccggaccacgtcgagccacgtcaattc
aacaagttgttacagcaggttaaagaccggccggacagtcaggccatctcgatggcgatg
ttgcggtcattgaaacacgcggaatacacgccggagaatatcggccacttcggacttgcg
cttgatgcgtacgcgcatttcacttcgccaatccgtcgttacccggatctgctggtgcac
cgtgcaatccgccacatcgtgcgtggcggcaaagccggtaaccacgactatgatcgtgcg
gcgatggaccacctcggccaggtctgctcagcccatgaacgatgtgccgaagacgctaca
cgcgaggtcgaggcgtggctgaagtgcgaattcatggaagataaagttggggaaacgttc
gccggcgtgattaccggagtgaccaattttggtgtcttcgtgcagttgtcagaatttcag
attgacgggctggtgcacgtaaccagtctgaagaacgattactaccagtttgatgcaagc
aggctggagctggtgggtgatcggggcggcaaacgctaccgcctgggcgacgcgatgagc
gtgcaggtacaacgagtggacatggagtcgaagcgtatcgatttcaggcccatggaagat
gaatctgaaccgcagaccgggcgcaagcgcgccgggtcgggcagcaagagacgaagcaaa
cgatga
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