Wolbachia endosymbiont of Onchocerca ochengi: wOo_06850
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Entry
wOo_06850 CDS
T02212
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
woo
Wolbachia endosymbiont of Onchocerca ochengi
Pathway
woo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
woo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
wOo_06850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
woo03400
]
wOo_06850
DNA repair and recombination proteins [BR:
woo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
wOo_06850
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
wOo_06850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
DEAD
UVR
Microtub_bd
AAA_30
AAA_7
AAA_5
Motif
Other DBs
NCBI-ProteinID:
CCF78279
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Position
612469..614406
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AA seq
645 aa
AA seq
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MEFQIVTHFKPAGDQPQAIDSLVTGLNNNKKDQILLGVTGSGKTFTMANVIARTNRPALI
MAHNKTLAAQLYEEMKGFFPYNSVGYFISYYDYYQPEAYSPQTDTYIEKDSTINEKIDML
RYSAICSLLERKDTITVASVSCIYGLGSPKSYINMTISLSVGDKICVDDFLSNLADLQYK
RSDIRFERGYFRVRGDIIDIFPACHKDKAWRLSLFGNKIEKISQIDAMTGNVIEHINKIT
VFPNSYHITSRKTLLQSIQLIKKELHERLDYYYSQNKFVEAKRLEQRTNFDIEMMVTTGT
CKGIENYSRYLYEMEAGYPPPTLFEYLPEGVILFVDESHVTIPQIGAMYSGNEARKKKLV
DYGFRLPSAFDNRPLTFEEWEAVRPQTIYISATPGKYELGKTNNVFIEQVIRPTGLTDPV
CIIKSTENQVDDVIHEAQLTINNGFCVLITTLTKKMAEKLADHMSEMNIKVSYLHSDIGA
LERVDIICKLRSKEIDVLVGVNLLREGLDIPECGLVAILDADKEGFLRSETSFIQTIGRA
ARNAEGKAILYADKITGSLDRALKETERRRKKQQEYNALHNITPKTIIKNISNTLQNKVV
AEEGINYINNVDLKNLKKQMLKHAENLEFEEAAKIRNIIKRFNNK
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggagtttcaaattgttacacactttaaaccagctggagatcagccgcaagcaattgat
agtttagttacagggctaaacaataataaaaaggatcagattttgcttggagttactggc
tccggaaaaactttcactatggcaaatgttattgcaagaacaaacaggcctgcattaatt
atggcacataacaaaactttagcggcacagctctatgaggaaatgaaaggatttttccct
tataattctgttggatattttatttcttactatgattattatcagcctgaagcttattca
cctcagactgacacttatattgaaaaggactccacaatcaacgaaaaaattgatatgcta
cgttattctgctatttgctctcttttagagcgcaaggacacgattacagttgccagtgtt
tcctgtatatatggtcttggttcgcctaaaagctatattaatatgactatatcattaagt
gttggagataaaatttgtgttgatgattttctgagtaatttagctgatcttcaatataag
cgttccgatattagatttgaacgaggatatttcagagtacgtggagatattattgatatt
ttccctgcttgtcataaagataaagcttggcgtttatcgttgtttggcaataaaatagaa
aaaatctctcaaattgacgctatgactggcaatgttattgaacatataaataaaatcact
gtttttccaaatagctatcacattacatcacgtaagactctattacagtcaattcagctg
attaaaaaagaactgcatgaacgcttggattattactactcacaaaataagtttgttgaa
gcaaaacgtcttgagcagcgtactaattttgatatcgaaatgatggttacaactggaact
tgtaaaggtattgaaaactattcacgttatctctatgagatggaagctggatacccgcca
cctactttatttgagtatttgcctgaaggtgtaattttatttgttgatgaaagtcatgtt
accattcctcagattggtgcaatgtatagtggtaatgaggcacgtaaaaaaaaattggtt
gattacggctttagacttccttccgcttttgataaccgtccgttgacgtttgaagagtgg
gaagcggtacgaccgcagactatttacatttcagctacccctggaaaatatgagttagga
aagaccaataatgtatttatagagcaagttattcgtccaacagggcttacagacccagtc
tgtattataaaatcgacagaaaatcaagttgatgatgtaatccatgaagcacaactgaca
ataaataatggattttgtgttctaattaccacattaacaaaaaaaatggctgaaaagcta
gctgatcatatgagtgagatgaatataaaggtgagttatttacactcagatattggtgcg
ttagagagagttgacattatatgtaaattaagatcaaaagaaatcgatgtgttagttggt
gttaacttactgcgtgaaggtcttgatattccggagtgtggcttagttgcaattttggat
gctgataaagaaggatttttgcgatcggaaacttcttttattcaaacgatagggcgtgct
gcacgtaatgctgaaggtaaggcaattttgtacgcagataaaataactggttctttggac
cgtgcgttgaaggaaactgaaagaagaagaaagaaacaacaagaatataatgcgttgcat
aatattacaccaaaaactataataaagaatatatctaataccctacaaaataaagtagta
gctgaggaaggtattaattatattaataacgttgatctaaaaaacttaaagaagcagatg
ttaaagcatgctgagaatctagagtttgaagaggcagcaaaaataagaaatattatcaaa
aggtttaataataaataa
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