Weissella paramesenteroides: CO680_03405
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Entry
CO680_03405 CDS
T05120
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
wpa
Weissella paramesenteroides
Pathway
wpa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
wpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CO680_03405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wpa03400
]
CO680_03405
Enzymes [BR:
wpa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CO680_03405
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CO680_03405
DNA repair and recombination proteins [BR:
wpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CO680_03405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ATF41144
UniProt:
A0A4V2EKI5
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All DBs
Position
651769..652605
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AA seq
278 aa
AA seq
DB search
MPELPEVETVRRGLTNLVAGRTVESTEVRWEKTVGGFTAEEFDQALRNQTILKIDRRGKY
LLFRFTGGITMVSHLRMEGSYYTVPAGTKPGKHDLVTFHLDHGVDLFYRDTRKFGRMNIV
PNDQVMTVAGLATIGPEPTEDTLTLDYMISEFGKSKMHVKPFLLNQNHIAGLGNIYVDET
LWQSKIHPLTAANQLTTDELAILRKNIIAELARATEHHGTTVHSFTNVFGNAGEFQNELQ
VYGRVGEPCLRCGEPLVKIKVAQRGTTYCPVCQIERTK
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgccagagctaccagaagtagaaactgttcgccgcggactgacaaatttagtggcaggt
cgcacggttgaaagcacagaagttagatgggaaaaaacagtcggcggttttacagcagaa
gaatttgatcaagctttacgaaatcaaacaattctaaagatcgaccgtcgcggaaaatat
ttattatttagatttacaggtggcatcaccatggtgtcacatcttcgcatggagggatca
tactataccgtaccagctgggacaaagccaggtaaacatgatttagtaactttccatcta
gatcatggggtggatctgttctatcgagatacgcgtaagttcggtcgtatgaatatcgta
cccaatgatcaggtcatgacagtggccggattagcaacgattggacctgaaccaacagaa
gatacattgacattggattatatgatttctgaatttggtaaatcaaaaatgcacgtgaag
ccgttcttgttaaatcagaatcatattgctggattggggaatatctatgtggatgagaca
ctttggcaatcaaagattcatcccctcacagcagcaaatcaattaacaacagacgaacta
gctattttacgtaaaaatatcattgctgaactagcacgagcaactgagcatcatgggacg
acagttcacagttttacaaatgtatttggtaatgctggagaattccaaaatgaattgcaa
gtttatggacgagtgggagaaccatgcttacgttgtggagaaccattggtcaagattaaa
gttgctcaacgagggacgacctattgcccagtttgtcagattgaaaggacaaaataa
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