Weissella paramesenteroides: CO680_03575
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Entry
CO680_03575 CDS
T05120
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
wpa
Weissella paramesenteroides
Pathway
wpa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CO680_03575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wpa03400
]
CO680_03575
DNA repair and recombination proteins [BR:
wpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CO680_03575
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CO680_03575
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_30
AAA
AAA_5
AAA_22
AAA_7
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ATF41176
LinkDB
All DBs
Position
689294..691309
Genome browser
AA seq
671 aa
AA seq
DB search
MINRHTDNEYELVSKYQPTGDQPEAIRKLVNGLKNGIKEQILLGATGTGKTFTISNVIAQ
TNKPVLVLSHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
NDEIDKLRNSATASLLARNDTIVVASVSSIFGLGNPEQYHDHVINVRVGDILERNDLMHR
LIDIQFQRNDIDFQRGRFRVRGDVLEVFPASSDAKALRIEFFGDEVDRIREIDSLTGEIT
AELDLATIFPATHFMTNDAIRDRALKTIQAELDDQLQKLEKDGKLLEAQRLKQRTEYDIE
MIREMGFTTGIENYSRHMDGRQPGEPPFTLLDFFPDDFIIIVDESHVTMPQVRGMYKGDR
ARKETLINYGFRLPSALDNRPLRIEEFEKHVNQIIYMSATPGDYENDRVPETDVAQQIIR
PTGLLDPEIEVRPVMGQIDDLIGEINKRVDNEERVFVTTLTKKMAEDLTDYLEDVGIKVK
YLHSDIKTLERTEIIRDLRLGKFDVLVGINLLREGIDVPEVSLIAILDADKEGFLRNTRS
LIQTIGRAARNENGHVIMYADSVTASMQAAMDETSRRRHIQIQYNEDHNITPHTIKKAIR
DLISASHEVDNQSTEKGSFTDVAFKDMARDDQNAMIANLEDQMRSAAKRLDFEDAANLRD
AVMELKLQIGK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgattaatcgtcatactgataatgaatacgaattagtttcaaaatatcaaccaaccggc
gatcagcctgaagctataagaaagttagttaatggcttaaaaaatggtattaaagaacaa
atattactgggcgcaaccgggactggaaaaacctttaccatttcgaatgttattgcgcaa
acgaacaaaccagttttagtactatcacacaataaaactttagcaggacaattatatggt
gaatttaaagagtttttccctaataatgctgtggaatactttgtttcatattatgattac
taccagcctgaagcttatgtaccatcatcagatacctatattgaaaaagattcatcaatt
aatgatgaaatcgataagttacgtaactcggccactgcttcgctattagcccgaaatgat
acaattgtcgtcgcctcagtgtcatcaatctttggtttaggtaatccagaacaatatcat
gatcatgtcattaatgttcgagtaggagatattctagaaagaaatgacttaatgcatcga
ctaattgatattcaatttcaacggaatgatatcgattttcaacgtggccgttttcgcgtt
agaggagatgttttagaagtatttccagcatcatccgatgccaaagcactgagaattgaa
ttttttggtgatgaagtcgaccgtattcgcgaaattgactcgcttactggagaaataact
gctgagttggacctcgcaacaatattcccagcaacccactttatgaccaatgatgcgata
cgtgatcgtgctttaaaaacaattcaagcagagttagatgatcaattacaaaagcttgaa
aaagatggcaaattacttgaagcacaacggttgaagcagcgaactgaatatgatattgaa
atgattagagagatgggcttcacgacaggaattgaaaattattcccgtcatatggatggt
cgacagccaggcgaaccaccttttacgctattagactttttccctgatgattttattatt
atcgtggatgaatcacatgttaccatgccacaagttcgaggaatgtataaaggggatcgt
gctagaaaagagaccttgattaactatgggttccgcttgccttcagcattggataatcga
ccattacgtattgaagaatttgaaaaacatgttaaccaaattatttatatgtcagcgaca
ccaggtgactatgaaaatgatcgtgtgcctgaaacagatgttgcacaacaaatcattcga
ccaactggtctattagatccggaaatcgaagtacgtccagtaatgggacaaatcgatgat
ttaatcggggaaatcaacaaacgtgttgacaatgaagaacgtgtttttgttacaactttg
accaaaaaaatggctgaagacctaactgactatcttgaagacgttggtattaaggttaaa
tatctacactccgatattaaaacattagaacgtaccgaaattatccgtgatttacgtctt
ggtaaattcgatgtattagtcggtatcaatctattacgtgagggaattgatgtacctgaa
gtttcattaattgcaattctcgatgctgacaaggaaggattcttgcgtaacacacgttcc
ttaattcaaacgattgggcgtgctgcccgtaatgaaaatggtcacgtcattatgtatgcg
gactcagtcactgcttcaatgcaagcagcaatggatgaaacttctcggcgccgtcatata
caaattcaatacaatgaagatcataatattacaccgcacacgattaagaaggccattcgt
gatttgatttcggcaagccatgaggttgataatcaatctaccgagaagggtagctttacc
gatgttgcctttaaagatatggcacgtgatgatcagaatgcaatgattgcaaatcttgaa
gatcaaatgcgttctgcagccaaacgtcttgattttgaagatgccgctaatctccgtgat
gcagtcatggaattaaaattacaaattggtaagtaa
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