Weissella paramesenteroides: CO680_04335
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Entry
CO680_04335 CDS
T05120
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
wpa
Weissella paramesenteroides
Pathway
wpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CO680_04335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wpa03019
]
CO680_04335
03400 DNA repair and recombination proteins [BR:
wpa03400
]
CO680_04335
Enzymes [BR:
wpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CO680_04335
Messenger RNA biogenesis [BR:
wpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CO680_04335
DNA repair and recombination proteins [BR:
wpa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CO680_04335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
TniB
SNF2-rel_dom
RecQ_Zn_bind
PhoH
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATF41320
UniProt:
A0ABD4XJA5
LinkDB
All DBs
Position
complement(848702..850141)
Genome browser
AA seq
479 aa
AA seq
DB search
MTINLEQVLQDKFGFESFKTGQKEILTALLSKQSTLAILPTGGGKTLIYQMMGAVRDGLV
MIVTPLLSLMQDQVARLNYLGEKNVVALNSTLTFENKKSVLKNLNRYHFLFVSPEMLSQE
QVQTALKQVKINLMVIDEAHTMVTWGQDFRPDYLSLPSIHEQLNRPQLLLLTATATPSMM
SAITENFHALQDKWFIYQQPVDRPNIFLHTEQLTNEIEKKQRLKYLIQTVNGPGIVYFTS
RKLATSMAEWLTNETGQRVVAYHAGMDTMSRYRVQQQFMQGEIDVITATSAFGMGIDKED
IRFVIHYHLSNDLSNYLQEIGRAGRDGQQAVAILLYVPGDERIQFNLIDQTIPDNYAIHS
YLDQSLVTTLTPEQVRLLNFYQNKGLSSAEIIQIFDSRRVMRQSNLWSMINYAKSDGQLR
NQISQYFGNVTDNLSQTDESVGVTDWYPKELNFVRKEDGKQQAKVVNWSKQLKKLFNLQ
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgacaattaacttagagcaggttttacaagataaatttggatttgagagttttaaaacg
ggtcaaaaagaaatcctaacggccttattgtcaaagcaatcaacattagcaattttacca
acaggcggtggtaagacgttgatttaccagatgatgggggcggttcgagatggattggtt
atgattgtcacgccattactttcactaatgcaggatcaggttgcacgattgaattatctt
ggtgaaaaaaatgtggtggctttaaattcgacattaacatttgagaacaaaaagagtgtc
cttaaaaatttaaatcgttatcattttttatttgtttctcctgagatgcttagccaagaa
caggtacaaacagctttaaaacaagtgaaaattaacttaatggttattgatgaagctcat
acaatggttacttggggtcaggattttcgaccagattatttatcattacctagtattcac
gaacagcttaatcgaccacaattacttttattaacggcaaccgcaacaccaagtatgatg
tcagcaattactgagaattttcatgcgctgcaagataaatggtttatttatcaacaaccg
gttgatcgaccaaatatttttttgcatacagagcaactaactaatgaaattgaaaaaaaa
caacgcttaaaatatttaattcagacggttaatggacctggtatcgtttattttacttca
cgtaagctagcaacaagcatggcggagtggctaacaaatgaaactggacaacgggtcgtt
gcataccatgctggtatggatacaatgtctcggtatcgtgtacaacaacaatttatgcag
ggagagatcgatgtcattacggcgacttccgcatttggcatgggcattgataaagaagac
attcgttttgtcattcattatcatttgagcaatgatctttcaaattatctgcaagaaatt
ggtcgtgcaggacgtgacggacaacaagcagttgcaatcttattgtatgtacctggggat
gaacgtattcaatttaatttgattgatcaaaccatccctgataattatgcgattcacagt
tatttggatcagtcgttggtgacaacactaacacctgagcaggtcagattattgaatttt
tatcaaaataagggcttatcatcagctgaaattattcaaatttttgatagtagacgcgtg
atgagacagagtaatttatggtcaatgattaactatgcaaagtccgatggtcagctgcgt
aatcaaatcagtcaatattttggtaatgtcactgacaacttatcgcaaacggatgaaagt
gtgggtgtgacagattggtatcccaaagaattaaatttcgtgcgaaaagaagatggtaaa
cagcaagcaaaggtggtaaattggtctaaacaactaaaaaaactatttaatttacagtaa
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