Weissella paramesenteroides: CO680_06765
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Entry
CO680_06765 CDS
T05120
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
wpa
Weissella paramesenteroides
Pathway
wpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CO680_06765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wpa03019
]
CO680_06765
03009 Ribosome biogenesis [BR:
wpa03009
]
CO680_06765
Enzymes [BR:
wpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CO680_06765
Messenger RNA biogenesis [BR:
wpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CO680_06765
Ribosome biogenesis [BR:
wpa03009
]
Prokaryotic type
rRNA helicases
CO680_06765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Helicase_RecD
CMS1
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ATF41763
UniProt:
A0A4Q7IWK3
LinkDB
All DBs
Position
complement(1353947..1355485)
Genome browser
AA seq
512 aa
AA seq
DB search
MKFSELGLTQDLLTAIEKHGYVEATPIQEKTIPLTMAGKDVIGQAQTGTGKTAAFGLPIL
EMIDNENKDVQALVVSPTRELAIQTQDELFKLGRDKHVRVQAVFGGADIRRQINGLNHGA
HIVVGTPGRLIDHIRRGTINLSHVKTLVLDEADEMLNMGFLEDIESILKAVPDERQTLLF
SATMPPAIKRIGVQFMTNPEHIQIAAKELTTDLVDQYYVRVRDFEKFDVLTRILDVQQPE
LAIMFGRTKRRVDELTRGLTLRGFKAAGIHGDLTQQKRTQVLKQFKNREIKILVATDVAA
RGLDISGVTYVYNFDIPQDSESYVHRIGRTGRAGAHGNSVTFVSNSEMDYLKDIEKLTKK
RMQPLKPYTREEALAGRMSVATDSISDIVKATAGVANSEQVDQLVEQYDAKALAAALLGA
VANVEQMDAEFKLSHERPLPHKHGNFGGSRRGGGYRGRRDGSRNGGYRGNRGQRERRSYD
RGSRTGSGDRSQRGHSGAPRRQSRNFVIKNND
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
ttgaagttttcagagttaggtcttacgcaagacctgttaacggccatcgaaaagcatggc
tatgtagaagcaacgccaatccaggaaaagacaattcctttgactatggctggtaaagac
gttattggtcaagcacaaacaggaactggaaaaacagcagcgtttggattgccaatctta
gaaatgattgacaatgaaaataaggatgtgcaagcattggttgtttcaccaacccgtgaa
ttagccattcaaacacaagacgaattatttaaattaggacgtgataagcatgttcgtgta
caagccgtttttggtggtgcagatattcgtcgtcaaattaacggattaaaccacggtgct
catattgttgttggaacacctggccgtttgattgaccacattcgtcgtggcacaatcaat
ttatcacatgttaagacattggttttggacgaagctgatgaaatgttgaacatgggattc
ttagaagatattgagtcaattttgaaggctgtgcctgatgaacgtcaaacgttgctattt
tcagcaacaatgccaccagcaattaagcgaattggtgtgcaatttatgacaaatcctgag
cacatccaaattgcagctaaggaattaacaactgacttggttgatcaatattacgttcgt
gtacgtgattttgaaaaatttgatgtcctaacacgtattttggatgttcaacaaccagaa
ttagcaatcatgttcggtcgtacaaagcgtcgtgttgatgaattgactcgtggattaaca
ttgcgtggtttcaaggccgctggtattcacggtgatttgacacaacagaaacgtactcaa
gtattgaagcagtttaagaatcgtgaaattaagattttggttgcgactgatgttgcggct
cgtggactagatatctcaggggtcacatacgtttacaactttgatatcccacaagattca
gaatcttatgttcaccgtattggccgtactggacgtgccggtgcacacggtaattctgta
acctttgtaagtaattcagagatggattacttaaaggatattgagaaactaactaagaag
cgcatgcaaccattgaagccttacactcgtgaagaagctttggctggtcgtatgagtgtt
gcaactgattcaatttcagatattgttaaggccactgctggtgttgctaattcagagcaa
gttgaccaattggttgaacaatatgatgcaaaggcattagcagctgccttattaggtgct
gttgctaacgttgagcagatggatgctgaatttaagttatcacatgaacgtccattacca
cacaagcatggtaatttcggtggctcacgtcgtggtggtggttaccgtggccgtcgtgat
ggttcacgtaatggtggttatcgtggtaaccgtggtcaacgcgagcgacgttcatacgat
cgtggttcacgtactggatcaggtgatcgttcacaacgtggacattcaggtgcaccacgt
cgtcaatcacgtaattttgtgattaaaaataacgattaa
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