Weissella paramesenteroides: CO680_07065
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Entry
CO680_07065 CDS
T05120
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
wpa
Weissella paramesenteroides
Brite
KEGG Orthology (KO) [BR:
wpa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
wpa03009
]
CO680_07065
Enzymes [BR:
wpa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CO680_07065
Ribosome biogenesis [BR:
wpa03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CO680_07065
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Cons_hypoth95
Methyltransf_31
MTS
RrnaAD
Methyltransf_15
Methyltransf_25
PrmA
TRM5-TYW2_MTfase
N6_N4_Mtase
PCMT
DOT1
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
ATF41818
LinkDB
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Position
complement(1424965..1426341)
Genome browser
AA seq
458 aa
AA seq
DB search
MSHTIMPVRLGQKLTGQVIDVLYNGFGVVMLNDYSIHMANAFPDETVTFEITQVNRKFAR
AEVIDVVDPSPDRLEAGKDYLLDVGIAPYINLRYEAQLKLKQFQVEKFYAAAGIDANIAP
TIGMENPTHYRNKTVVPIKRDGDKLVTGFIKRRTPGEILPLSDYYVNDPVIDQTIGTVRD
ILNAHHISVFSDETQQGEMRYIMVRRGYYSHELMVVLVAQTATIKDEMAIANEIAAIVPG
IRSVVLNHNPRALHLLMSGDNRTLWGADAIHDTLLGIEFEIGPNSFYQVNPQTTEVLYAL
AARKAELKPTDTVIDAYSGIGTIGLTVASQVKQVLGVEVIERAVIDAQKNVMNNQVKNAT
FITADAPAQMHRWQQEGLHANVIFVDPPRRGLTNELLDAVTEMRPDRFVYVSCNPATMAR
DAKYLIEQGFHIKGDVQPLDQFPQTAHVEVVTVFEPNN
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatacaatcatgcctgttcgtttgggacaaaaattgacgggtcaggtaattgat
gttctctataatggttttggtgttgtgatgttgaatgattattcgattcacatggcaaat
gcttttcctgatgagacagtcacttttgaaataacacaagttaatcgaaagtttgcccgt
gcagaggtgattgatgtcgtagacccatcaccagatcgcttggaagctggtaaagattat
ctacttgatgtcggaattgcgccgtacattaacttacgttatgaagcacaactaaagtta
aaacaatttcaggtggaaaaattttatgcagcagcaggtattgatgcaaatattgcacca
acaataggtatggagaatccaacacattaccgcaataaaactgtggtacccatcaaacgt
gatggcgataagctagtgacaggatttattaaacgacgaacaccaggagaaattctccct
ttaagtgattactatgttaatgatcctgttattgatcaaacaattggcacagttcgcgat
attttaaatgcacaccatatttcggtattcagtgatgagacacagcagggtgaaatgcgc
tacatcatggtgcgccgcggttattatagtcatgaattaatggttgttttagttgcgcaa
acggcaactattaaagatgaaatggctattgcaaacgaaattgcggcaattgtgccagga
attcgtagcgttgttttaaatcataatccaagagccttacatttgttaatgtctggtgat
aatcggacattatggggggcagatgctattcacgataccttgcttggcatagaatttgaa
attggaccaaactcgttttatcaagtaaatccacaaacaacagaagtgctgtatgccttg
gctgctagaaaggcagaactaaagccaacggatacagtcattgatgcttattcaggtata
ggaacgattggattaacagttgccagccaggtaaagcaggtgttaggggttgaggtaatt
gaacgtgcggttattgatgcgcaaaaaaatgtgatgaataatcaagtgaaaaatgcgacg
tttattactgcggatgcgccagcacagatgcatcgatggcagcaggaagggttacatgct
aatgttatttttgttgatccacctcgtcgggggttgaccaatgaattacttgatgcagta
actgagatgcgaccagatcggtttgtttatgtgtcatgcaacccagcaacaatggcaaga
gatgcgaaatacttaatcgaacaaggctttcatattaaaggggatgttcaaccactggat
caattcccacaaactgcccatgttgaagttgtgaccgtttttgaaccgaataattaa
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