Weissella paramesenteroides: CO680_07650
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Entry
CO680_07650 CDS
T05120
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
wpa
Weissella paramesenteroides
Pathway
wpa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CO680_07650 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wpa03400
]
CO680_07650 (mfd)
Enzymes [BR:
wpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CO680_07650 (mfd)
DNA repair and recombination proteins [BR:
wpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CO680_07650 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
MFD_D3
AAA_30
AAA_22
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ATF41916
LinkDB
All DBs
Position
complement(1540373..1543873)
Genome browser
AA seq
1166 aa
AA seq
DB search
MQLTELLQQDKALQELATGLTKGGRHLMTGISGTARTVYLAALQQRTQQPMVIVSDSQFH
ADQLAEDLQALLGNEHVAVFPAEESLAAEMAVTSLDTRLARVSALHLLLTDPQAVVVTGI
AGAQRYLPPVKKFQQAQLTIDFDHEYELKDLEIKLHQMGYHRNTTVEQPGEFAIRGSIVD
VYPLDADYPVRLDFFDTELDSMRSFDAENQRSIKNIDSLTILPAADLVLSDDDRQKAKTQ
LELAMTKQRDQLAGAEKRHLTEAITPLLTTLADGQILPEMRAYLHMLYPDAASLFDYLPV
NGIVVFDDYPRAIENAAQMRLDDTNWWAEKLDKQQVLTTADFGWSLTDQARDIQQASLIF
SPLQRGIGQLRQTSLTNVTLRPTQQFFGQMPLLKGEVTRWQKQNMTVIFLTNSDDRQVKL
VQTLNDFGIKVNQVPVDGLATGRTQSATLPLSAGFELPMQKLVVLTEKELFQQVRKRAPK
RQTLSNAERIKSYNELKPGDYVVNVNHGIGIYEGMQTIENRGVKQDYITIAYQKGDKLFI
PVTQLDLVQKYVGAAEKAPRINKMGGTEWQRAKAKVAKKVEDIADDLLALYAEREIKQGY
AFAPDDEEMRRFEEAFPYPETPDQIRSVKEIKADMEKSRPMDRLLVGDVGFGKTEVAMRA
AFKAAHEGKQVAMLVPTTILAQQHYDSFLNRFEGTNLKIAWMSRFQTKKQMTEIKTGLKN
HTIDIVIGTHSLLAKDVAFGDLGLLIIDEEQRFGVKHKERLKSLQTNVDVLTLTATPIPR
TLNMAMVGVRDLSVIETPPANRYPIQTYVMEQNGRVIANAIEREMARGGQTFYLHNRVAD
IEKVAGMIQSLVPEAQVAYIHGQMTETQMEGILVDFINGEYDVLVTTTIIETGVDIPNAN
TLFVENADYMGLAQLYQLRGRVGRSNNVAYAYFTYPGTRSLNEESEKRLTAIRDFTELGS
GFKIAMRDLSIRGAGDLLGQSQHGFINAVGYDLYTQMLQEAVAAKQGKKQKRFDSELDLQ
VEAYLPADYVADGPQKIDLYQRIRKATKAEQFAEITDDLVDRFGDIPAATNRLLTVSQLK
AIADQVGVAQIKRTVNQPTIITIRFDKQAKITHEQVQQAMADTKTRGQIKVNDPVLFAMA
IQPKQTDDEWLQSLIKFLSALLPKKD
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgcaactaactgaacttttacaacaggataaagctttacaggagctagctactgggttg
actaagggcggtcgtcatttgatgacgggaatttctggcactgcccgtacggtttattta
gcagcgttacagcaacgaactcagcaaccaatggtgattgtgtcagatagtcaatttcat
gccgatcaattagcggaagatttacaagctttgttgggtaacgaacacgttgcggttttt
cctgctgaagaaagtttagcagctgaaatggcagtgacatcgttagacactcgtttggcg
cgtgttagtgctttgcacctattattaacggatccacaagctgttgtggtaactggtatt
gcgggggcacaacgttatttgccacccgttaaaaagtttcagcaagcacaattgacgatt
gattttgatcatgagtatgagttaaaagacttagaaataaaattacatcaaatgggttat
caccgaaataccacggtcgaacaacctggtgaatttgcgattcgtggctcaattgttgat
gtgtacccattggatgcagactatccggttagattagatttttttgatactgaactggat
tcaatgcggtcatttgatgcggaaaatcagcgtagtattaaaaatattgattcattgacc
attttgccagcagctgacttagttttgagtgacgatgatcgtcaaaaagcaaaaacacaa
cttgagttggcaatgacgaaacaacgcgaccaattggctggtgcagagaaacggcatttg
actgaagcaatcacgccattactgacaacactagcagatggacaaattttgccagaaatg
cgggcatatttacatatgctgtatccagatgctgccagtctttttgactatttgccagta
aatggcattgtggtattcgatgattatccacgtgccattgaaaatgctgcgcaaatgcga
ttagatgacacaaactggtgggctgagaaacttgataagcaacaagttttgacaacggca
gattttggctggtctttgactgatcaagcacgtgatatccaacaagcaagcttaatcttc
tcgccactacaacgaggaattggacaattacgacaaactagcttaactaatgtgacatta
cgaccaacacaacaattttttggtcagatgcctttgctgaaaggtgaagtgacacgttgg
caaaaacaaaatatgaccgtaatctttttgactaattcagatgatcgacaagttaaattg
gttcaaaccctaaatgactttggtattaaagtaaaccaagtgcctgttgacggattagca
actggtcgtacgcagtcagcaacactaccactaagtgcgggatttgagttaccaatgcaa
aaattagtggtgttaaccgaaaaagaattgtttcaacaagttcgtaaacgggcaccaaaa
cgtcaaacactgtcaaatgcggaacgtattaagagctataatgagctgaaacctggcgat
tacgttgtgaatgttaatcatgggattggtatctatgaaggcatgcaaacaattgaaaat
cggggtgttaagcaagactatattacgatagcttatcaaaagggagataagttatttatt
ccagtaacacagcttgatttggtgcaaaaatatgtcggtgcggctgaaaaagctcccaga
atcaataaaatggggggtactgaatggcaacgtgcaaaggcgaaagttgccaaaaaggtt
gaggacattgcagatgatctcttggctttgtatgcggaacgtgaaattaaacaaggctac
gcttttgcaccagatgatgaggaaatgcgtcgctttgaagaggcgtttccttaccctgaa
acaccagaccaaattcgttcggtcaaagaaattaaagcagatatggaaaagtcacgccca
atggatcgtttattggtgggtgatgttggttttggtaaaactgaagtggccatgcgagcg
gcgtttaaagcagctcacgaaggtaaacaagtggctatgttggtaccaacaactattttg
gcccagcaacattacgattcattccttaaccgttttgaaggaaccaatttaaaaattgct
tggatgtcgcgttttcaaacaaagaaacaaatgacagaaatcaagactggtttgaagaat
catacaatcgatattgttattggtacacacagtttattagctaaagatgtggcgttcggt
gatttaggattgctaattattgatgaagaacaacgttttggggtaaaacataaggagcgg
ttaaaaagcttgcaaacaaatgtggatgtcttaacgctgacggcgacgccaatcccccgt
acgctgaatatggcaatggttggtgtacgtgatctatcagtgattgaaacgccaccagcc
aatcgttatccaattcaaacatatgtgatggaacaaaatggacgggtcattgcaaatgcg
atcgaacgtgaaatggcacgtggcggccaaactttctatctacataatcgcgtggctgat
attgaaaaagtcgcggggatgattcaaagtttagttcctgaagcacaggttgcatatatt
catggccaaatgactgaaacacaaatggaagggattttggtcgactttatcaatggtgaa
tatgatgttttagttaccacaacaattattgaaactggggtagatattccaaatgctaat
acattgtttgttgaaaatgcagactatatgggattagcgcaattgtaccagttacgaggt
cgcgtgggtcgttcaaataacgttgcttatgcatattttacctatccaggtacgcgttcg
cttaatgaagaaagtgagaagcgactaacggctattcgtgattttacagagctcggctct
ggctttaaaattgctatgagggatctgtcgattcgtggtgcaggggacttgctgggtcaa
tcacagcatggatttattaatgctgttggatatgatttatatactcaaatgttgcaagag
gcagttgctgctaaacagggtaagaaacaaaaacgttttgattcagaattagacttgcag
gtcgaagcctatttgccagctgactatgtggcagatggtccacaaaagattgacttatac
caacgtattcgtaaggcaacgaaggctgaacaatttgctgaaattacggatgatttggtt
gatcgatttggtgatataccagcagctaccaatcgtttattaacagtctcacagttaaaa
gcaattgctgatcaagtgggagttgcccagattaagcgaacagttaatcaaccgacgatt
ataactattcgttttgataagcaagctaagataactcatgagcaagtccaacaagcgatg
gctgacacgaaaactcgtggtcagattaaagtgaatgatcccgtactatttgcgatggct
attcagccaaagcaaacggatgatgaatggttgcaaagtttaataaagtttttgtcagca
ttattgccaaaaaaggactag
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integrated database retrieval system
