Watersipora subatra (red ripple bryozoan): 137385778
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Entry
137385778 CDS
T11735
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
wsb Watersipora subatra (red ripple bryozoan)
Brite
KEGG Orthology (KO) [BR:
wsb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
wsb03016
]
137385778
Enzymes [BR:
wsb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
137385778
Transfer RNA biogenesis [BR:
wsb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
137385778
Prokaryotic type
tRNA splicing ligases
137385778
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
AJM1_C
Motif
Other DBs
NCBI-GeneID:
137385778
NCBI-ProteinID:
XP_067928433
LinkDB
All DBs
Position
1:complement(29244348..29278398)
Genome browser
AA seq
507 aa
AA seq
DB search
MGIVRTYNEELSYIEKLTPVSWKIKKGFVPNMNVEGIFYVNDPLERIMFDELKQHSHHQG
FGGFLPGVKQIANVAALPGIVGKSVGLPDVHAGYGFAIGNMAAFDMSDPTAIVSPGGVGF
DINCGVRLLRTNLSEKDVLPVKEELTQSLFDHIPVGVGSKGVIPMGARDLEEALEMGMDW
SLREGYAWAEDKEHCEEYGRMLQADPRKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIY
DKHAASKMGIDYKGQVCVMIHSGSRGLGHQVATDALVSMEKAMKRDKIEVNDRQLACARI
SSEEGQDYLKGMASAANYAWVNRSSMTFLTRQAFAKKFQTTPDDLDMHVIYDVSHNIAKV
EEHYIDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQG
MNETFGSTCHGAGRAMSRAKSRRNIGFEEVLESLKEKGISIRVASPKLVMEEAPESYKNV
TDVVNTCHMAGISTKCIKLRPIAVIKG
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggggatcgttcggacttacaatgaggagttgtcctatattgaaaagttgactccagtt
tcttggaagatcaaaaaaggttttgttcctaatatgaatgtggaaggcatattttacgtc
aacgacccgttggagaggatcatgttcgatgagttgaagcagcacagtcaccatcaaggt
tttggtggttttttgcccggtgtaaaacagatagccaatgtggctgcccttcctggcatc
gtcgggaagtctgttggtctgcctgatgtgcatgctggatacggttttgctattggcaac
atggcagcattcgacatgtctgaccccacagctatcgtgtcaccgggtggagttggtttt
gatataaattgcggggtgcgtctgctgcgtactaatcttagtgaaaaagatgtgttgcct
gtcaaagaggagctgacacagtcactatttgaccatattcctgtaggtgttggctcaaag
ggagtcataccaatgggtgcacgagacctggaggaggcattagagatgggaatggactgg
tcactaagagaaggctatgcatgggcagaagacaaagaacactgtgaggaatatggtagg
atgttgcaggctgatcctaggaaggtcagcatgagggcaaaaaagagaggacttcctcaa
cttggcaccttgggggcaggcaatcactatgccgagattcaggtggtagatgagatatac
gacaagcatgctgccagtaagatgggtattgactacaaaggtcaggtctgcgttatgatt
cacagcggcagcaggggtcttggtcaccaagtggccacagatgccttggtgtccatggag
aaggcgatgaaaagagacaagatagaggtgaatgataggcaacttgcctgcgcgcgcatc
tcgtctgaggaaggacaagactacctgaagggcatggcttcagcagcgaactacgcctgg
gtcaaccgctcgagtatgacctttctcactcgccaggcttttgcaaaaaagtttcaaaca
acacctgatgaccttgacatgcatgtcatatacgacgtatcgcacaatatagccaaggtt
gaagagcattacatcgatggcaagcagaagactctgcttgtgcataggaagggttccact
cgtgccttcccgcctcatcacccgcttataccagtggattatcaattaacagggcagccg
gtgctcatcggaggcacaatgggaacgtgcagctatgtgctaactggcacagaacagggt
atgaacgagacgtttgggtctacttgccatggagccggtcgggccatgtcgcgtgccaag
tcgagaaggaacatcggatttgaagaagtcttagaatcgttaaaggagaagggaataagc
atcagagttgcttctcccaaactggtaatggaggaggctcccgagtcatacaagaatgtc
acagatgtagtcaacacatgtcacatggctgggataagcacaaagtgcataaaactccgt
cccatcgctgttatcaaaggctga
DBGET
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