Watersipora subatra (red ripple bryozoan): 137401186
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Entry
137401186 CDS
T11735
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
wsb Watersipora subatra (red ripple bryozoan)
Pathway
wsb03013
Nucleocytoplasmic transport
wsb03015
mRNA surveillance pathway
wsb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
wsb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137401186
09122 Translation
03013 Nucleocytoplasmic transport
137401186
03015 mRNA surveillance pathway
137401186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wsb03019
]
137401186
03041 Spliceosome [BR:
wsb03041
]
137401186
Enzymes [BR:
wsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137401186
Messenger RNA biogenesis [BR:
wsb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
137401186
Spliceosome [BR:
wsb03041
]
Complex C
Other components
EJC/TREX
137401186
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
137401186
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
DUF6563
Utp25_C
AAA_19
Motif
Other DBs
NCBI-GeneID:
137401186
NCBI-ProteinID:
XP_067943673
LinkDB
All DBs
Position
7:complement(42443005..42458337)
Genome browser
AA seq
427 aa
AA seq
DB search
MADNTELTEELLDYEEDDQQAPAAEEQAAGDAKKVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGEVAVVVLC
HTRELAFQISKEYERFSKYMPTVKAAVFFGGMPIQKDEQTLKKNTPHIVVGTPGRMLALC
RNKSLNLKNVKHFVLDECDKMLETLDMRKDVQEIFRMTPHEKQVMMFSATLSKDVRPVCK
KFMMDPMEVYVDDDSKLTLHGLQQHYVKLRDNEKNRKLFDLLDALEFNQVIIFVKSVQRC
MALAQLLLEQNFPAIAIHRAMTQEERLSRYQQFKDFNKRILVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKVLNDVQDRFEVNITELPDEIDL
SSYIEGR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaacactgaactcactgaggaacttttggattatgaagaggatgatcagcaa
gccccagcagcggaagagcaagctgcaggggatgccaaaaaagttaaaggatcctatgtg
tccattcatagttctggatttagagattttctgttaaaaccagagttactaagagccatt
gttgattgtggctttgaacatccatctgaagttcaacatgaatgcatcccacaagctatt
ctctccatggatgttttgtgtcaggccaagtccggtatgggaaagactgccgtctttgtc
ctggccacattgcaacaattagagccggttgatggtgaggtcgcagttgtggtactctgt
cacacaagggaacttgcctttcaaatcagcaaagagtatgagcgattcagtaaatacatg
cccacagtaaaagcagctgtgttttttggaggcatgcctatacaaaaggatgagcagact
ttgaaaaagaatactccccatattgtggttggcacacctggacggatgcttgccctctgt
aggaacaagagcctgaacctcaagaatgtcaagcacttcgtactcgatgaatgtgataaa
atgttggaaacccttgatatgaggaaagatgtgcaagagattttccgaatgactcctcat
gagaaacaagtgatgatgttttctgctactctcagtaaagatgttcgtcctgtctgcaaa
aagttcatgatggatcctatggaagtgtatgttgatgatgactcaaagctgacattgcat
ggcctccagcaacactacgtcaaactccgtgacaacgaaaaaaacagaaagttatttgac
ctcttagatgcccttgaattcaatcaggtgatcatctttgtgaagtcagtccagcgatgt
atggcactagcccagttgcttctagaacagaactttcccgcgattgccattcatagagca
atgacacaagaggagcgtctctcccgctatcagcagttcaaggactttaataagagaatt
ctcgtagctaccaatttgtttggccgaggaatggacattgaacgtgttaacattgtcttc
aactatgacatgccagaagactcggacacctacctacatagagttgctcgggctggccgc
tttggtaccaaaggtttggctgtaacctttgtgtctgatgagactgatgccaaggtgctc
aatgatgtgcaagacagatttgaagtaaacatcactgaactcccagatgaaatagatctc
agctcctatattgaggggagataa
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