Wallemia mellicola: WALSEDRAFT_54919
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Entry
WALSEDRAFT_54919 CDS
T03142
Name
(RefSeq) TFIIH basal transcription factor complex, subunit SSL1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
wse
Wallemia mellicola
Pathway
wse03022
Basal transcription factors
wse03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wse00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
WALSEDRAFT_54919
09124 Replication and repair
03420 Nucleotide excision repair
WALSEDRAFT_54919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wse03021
]
WALSEDRAFT_54919
03400 DNA repair and recombination proteins [BR:
wse03400
]
WALSEDRAFT_54919
Transcription machinery [BR:
wse03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
WALSEDRAFT_54919
DNA repair and recombination proteins [BR:
wse03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
WALSEDRAFT_54919
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Tfb4
Motif
Other DBs
NCBI-GeneID:
18472701
NCBI-ProteinID:
XP_006959195
JGI:
Walse1_54919
UniProt:
I4Y9L8
LinkDB
All DBs
Position
Unknown
AA seq
444 aa
AA seq
DB search
MSRDSRSHNEEYDENSDDSDILDADDGDFDQTNSKSKQKETGYSWESEYKRSWDVVAEDE
SGSLTTSVNAFIERNKRRRRHGGIPIQRAIIRHNLLVLDLSLAMSDRDMRPNRFLLSLEY
AREYVKEYFDQNPIGQMGAIGMRSGVAEWICKMSGSQHDLVKSLQNKNKLEPNGEPSLQN
ALEMARASMAHLPTHASREIVVVFGSLTTCDPGNIHDTLRALIRDKIRVNIISLAAEVRI
LREVAEKTGGTLSVALDEGHYKDVLFETVPPPAVHTAKALNTVEQGGGSVDESDLMQMGF
AVRLPYTAPLTLCACHSELRRQGYICPRCGSKLCDIPTDCAVCDLVVVSSPHLARSYHHL
FPVPDWAVVNPQAITETSDTRCFGCRQVFPPVAQSMTLPTPTAATVSANISATGRYRCPK
CMHDFCSECDIYCHETLHVCPGCQ
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgtctagggatagcagatcgcacaacgaagaatacgatgagaactctgatgattctgat
atcttagacgcagacgacggcgattttgatcaaacgaatagcaaatcaaagcagaaagaa
acgggttatagctgggaatctgaatacaaacgtagttgggacgtcgtcgcagaggatgaa
tccggttcgttgacgacatccgtcaatgctttcatcgagcgaaacaaacggcgaagaaga
cacggcggcatacctatacaaagggctattattagacacaatctactcgttttagatctc
agtttagcaatgtcagacagggatatgcgtccaaataggttcttacttagtttagaatat
gcgagagagtacgtgaaggaatatttcgatcaaaatccaatcggacaaatgggtgcgata
ggtatgagatctggtgtagctgaatggatatgcaaaatgtccggtagtcaacatgatttg
gttaaaagtcttcaaaataagaacaaattagagccaaatggtgaaccatcattacaaaac
gctttagagatggctagagcttctatggcacatctaccaacacatgcatcacgtgaaatt
gtcgttgtctttggtagtttaacaacatgcgaccctggaaatattcatgatacactcaga
gctcttataagagataaaattcgcgttaatataatctcattagctgctgaagttagaatt
ttacgcgaagtagcagagaaaacaggtggaacattatctgttgctttggatgaaggtcat
tataaagacgttctatttgagacagtaccaccacctgcagtacacacagccaaggcttta
aatacagtcgagcaaggtggtgggtcagtggatgaatctgatctaatgcaaatgggattt
gctgtaaggttgccctacacagcgcctctgacgctatgtgcatgccactcggaattgcga
aggcaaggctatatttgtccaaggtgcggtagtaagctatgcgatataccaacggattgt
gccgtttgtgatttggtcgttgtatcaagtccgcaccttgcacgatcttaccatcactta
ttccctgtaccagactgggcagtagtgaacccacaagctattactgaaactagtgatacc
agatgctttggatgtagacaagtatttccacctgtagcccagtctatgacacttccaacg
ccgacagcggcgactgtgtcagcgaatataagcgcaacaggcaggtatagatgtccaaag
tgtatgcatgacttctgtagcgaatgtgatatctattgtcacgaaacacttcatgtttgt
ccaggatgtcaataa
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