Wallemia mellicola: WALSEDRAFT_60013
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Entry
WALSEDRAFT_60013 CDS
T03142
Name
(RefSeq) hypothetical protein
KO
K12830
splicing factor 3B subunit 3
Organism
wse
Wallemia mellicola
Pathway
wse03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
wse00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
WALSEDRAFT_60013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wse03021
]
WALSEDRAFT_60013
03041 Spliceosome [BR:
wse03041
]
WALSEDRAFT_60013
03036 Chromosome and associated proteins [BR:
wse03036
]
WALSEDRAFT_60013
Transcription machinery [BR:
wse03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
WALSEDRAFT_60013
Spliceosome [BR:
wse03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
WALSEDRAFT_60013
Complex B
WALSEDRAFT_60013
Complex C
U2 SnRNP specific factors
WALSEDRAFT_60013
Chromosome and associated proteins [BR:
wse03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
WALSEDRAFT_60013
TFTC complex
WALSEDRAFT_60013
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
18473683
NCBI-ProteinID:
XP_006957575
JGI:
Walse1_60013
UniProt:
I4YEC8
LinkDB
All DBs
Position
Unknown
AA seq
1208 aa
AA seq
DB search
MSLHLYNLTLEDPQNINESIVGQFSGTKSQEIAVNKSNILEIYRLNLETIKLELIASSRL
FSIIRSIKAFKLTGSKKDFIVVSSDSGKLTVLELVGDKLVVLHSETYGKTGVRRIIPGQF
LTCDPKGRSLMIASLDKSKLVYILNRDNQANLTISSPLEANRNNSITHHITAVDTGYENP
QFAALETDYEEIDQDPTGEALINSNKLITFYELDLGLNHVVKKWSEPTDPKANMLIQVPG
GQSASTDTFDGPSGVLICTVDYLIWYRPESESHRVPIPKRSHPLENNTSDGTIIISAVLH
KMKGAFFFLLQSEQGDLFKLTMELNGEDVISLRIKYFDTIPPSNSINILKSGYLFASSEF
SNHNLYQFQKLGDDDNELEYSSSSYENNGMPSLENPLPIESAYFTPRGLDNLVPVDEIQS
LAPILDAKVQSIYAGDTPQIYTASGVGSRSSLRVMRHGLDVIEAVSSELPAPPNGIWTLK
QNAQDMYDSLIVLSFVNGTLVLGIGESIEEVSDTGLATSVSTLSVDQLGEDSMIQVFPQG
IRHILNDKRVNEWKSPSDTYITASTTNSRQVCVALSNGELVYFEMDNEGQLNEFQERKSM
ESTVTTMSIGEVPQGRQRCPYLALGCDDQTIRIVSLDPENTLEVVSVQAVTAQPSSICVA
EILDKSLDKYNPTLFVNIGLANGVLLRTVLDTVNGSLADTRTRFLGAKPVVLRRVTVDKQ
QAVMALSTRTFLNYAHGDQMYFTPLLYEPLDQVSSFNAELCPDGLIGISDTVLRIFTLPN
VGQRMKQDSVALSYTPRKILLHPTAPLFLTIESDHRTISRERQAELLTSKGYNPEEHNFD
AVQFGNVRMEAGNWASCVRMIDPVTLTTVNKVELDNNEAAFSAAFVQWAGHEDETHLVVG
TAKDRMMMPQSHKEAYLRVYKVTQDSQLELLHKTDIDDVPYAIHAFKGRLLAGVGKALRL
YDLGKKRLLRKCENKSFAAGIVNLNVVGSRIYVGDMQESVSFAVYKAPENRLLVFADDIM
SRWTTTATPVDYDTVAGGDKFGNIFITRVDKSTSEWVDEDESGGGLLHARGLYHGAPNRS
KLLAHFYVGDIVTSITKSQLSAGGRDVLVYTCLHGTVGMIIPFASKDDIEFMSTLELHMR
QESPSLVGRDHLGFRSYYIPCKAFVDGDLCELYASLPVTKQQAIANELDRTSGEVLKKIE
SLRSAAGF
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttcatctttacaatctcaccctagaggatcctcagaatataaatgagtccata
gttggtcagtttagcggcacgaaatcacaagagatcgctgttaacaagtcaaatatcctc
gagatctacaggttgaaccttgagactatcaaactagaattgatagccagtagcaggtta
tttagtataattagatcaataaaagcattcaagttaactggttcaaaaaaggatttcatc
gttgtatcctcagattctggtaaactcacagttttggaattagtgggcgacaaactcgtc
gttttacactctgaaacctatggtaaaactggtgttaggagaataataccaggtcaattc
cttacatgcgatccaaaaggcagatcactcatgattgcctcactcgacaagtccaagttg
gtatacatccttaacagagataatcaagcaaatctcaccatatcctcacccttggaagct
aatagaaacaattcaatcacccatcatatcaccgctgtcgacactggttacgagaatcct
caattcgctgcattggagactgactatgaggaaatagatcaggatccaactggagaagct
ctcataaatagcaataagctgattaccttttatgaacttgacttaggtctcaatcatgtc
gtcaaaaaatggtcagaacctaccgatcctaaagctaacatgcttatacaagtgcctggt
ggccaatcagcatctacagatacatttgatggtccttctggtgttcttatttgcaccgtc
gattatctcatttggtatagaccagaatcagaatctcatagagttccaattccaaagaga
agccacccattagaaaacaatacatctgacggcaccattatcatatcagcagttcttcat
aagatgaagggtgcattcttctttcttttgcaatctgaacaaggtgatttgttcaaattg
acaatggagcttaacggtgaagacgttattagtttacgcataaaatactttgatacaatt
ccaccatctaactcaatcaacattcttaaatccggttatttatttgcatctagtgaattc
tcaaaccataatctctatcaattccaaaagctcggtgacgatgacaacgaactggaatat
tcttcctcaagttacgaaaataatggtatgccatcattggagaacccattaccaatagaa
tcagcttactttacaccacgtgggcttgataatttggttccagttgatgaaattcagtct
cttgctccaatacttgatgccaaagtgcaatctatatatgcaggtgatacaccacaaata
tatacagcatctggtgttggctcacgctctagtttacgagtgatgaggcatggtttggac
gtaattgaggctgttagctctgaactgcctgcaccacctaacggtatctggacactaaag
cagaacgctcaagatatgtacgattcattgattgtactctctttcgtcaacggtacatta
gttttaggtataggggaatcaatcgaggaagtatctgataccggtttggccacatcagtt
tctacactctcagttgatcaactcggtgaagacagcatgatccaagtcttccctcaaggc
ataaggcacattcttaatgacaaacgtgtgaatgagtggaagtcaccatcagatacatat
attacagcgtcaacaacaaattcacgtcaagtatgtgttgctttatcaaacggtgaatta
gtatactttgaaatggacaatgaagggcagcttaatgagttccaagaacgtaagagtatg
gaatcaacagttacaacgatgtcaataggagaggttccacaaggcaggcaacgttgtcca
tacctcgcgttgggatgtgatgaccaaactattagaatagtatcactcgatcctgaaaat
acgcttgaagtggtgtctgttcaagcagtaacagctcagccatcatcaatatgtgttgct
gaaatcctcgataagagtctagacaagtataatccaaccttgttcgtcaatatcggttta
gcgaatggtgttctcttgcgtacagttttagacaccgtaaatggtagcttggcagacacg
agaacacgtttcttgggagcaaagccagtagttttgcgtagagtcacggttgataaacaa
caagctgtcatggcgttatcaactagaaccttcttgaactacgcccatggtgatcaaatg
tactttacaccactcctttatgaacccttagatcaagtcagctcattcaatgcagaactt
tgccctgatggattgatcggtattagcgatacagtgttgagaatattcacattacctaat
gtcggtcagaggatgaaacaagacagcgttgcattatcgtacacacctagaaaaatactc
ttgcatcctactgccccactcttcttgacgattgaaagtgatcatcgtacaattagcaga
gaaagacaagctgaattgctcactagtaaaggatacaatccagaggagcacaactttgac
gccgttcaatttggtaatgtccgcatggaagctggaaattgggcaagttgcgtgagaatg
attgatccagtcacacttacgactgtcaataaagtagaattggacaataatgaagcagca
ttcagtgcggcatttgtacaatgggctgggcacgaagatgaaacccatcttgttgtcggt
acagccaaagatcgtatgatgatgcctcaatcacacaaagaagcatatttaagagtatac
aaagttacccaagatagccaactggagttgctccataagactgatattgacgatgttcct
tacgcaattcacgcattcaagggccgcctgttggcgggtgtcggcaaggctttgcggttg
tacgatctcggtaaaaagagactactccgtaaatgcgagaataagtcatttgcagcaggt
attgtcaatttgaatgtagttgggtcaagaatatacgtcggagacatgcaagaatcggtg
tcatttgcggtttacaaagcaccggaaaacagattattagttttcgctgatgacattatg
tcaagatggacgacaactgcaacacctgttgactacgataccgttgcaggtggagataaa
tttggtaatattttcattacacgtgttgacaaatcgacatctgaatgggtagacgaagac
gaaagtggtggtggtcttcttcatgcaagaggtttatatcacggtgcaccaaataggtct
aaattgcttgcacacttctacgttggtgatatcgttacaagcataacaaaatcacaattg
agtgctggtggtagagatgttctcgtatatacatgtttacacggtactgttggaatgata
ataccattcgctagcaaggacgatattgaatttatgtcaacgttagaattgcatatgcgt
caagagtcacctagtttagttggaagggatcatctcggatttagaagttattacattcca
tgcaaagctttcgttgatggagacttatgtgaactttacgcaagtctacctgtgactaag
cagcaagcaattgcgaacgaattggatagaacatctggagaagtactcaaaaagattgaa
agtctgagatcagcagcaggtttctaa
DBGET
integrated database retrieval system
