Weissella soli: WSWS_00792
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Entry
WSWS_00792 CDS
T06066
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
wso
Weissella soli
Pathway
wso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WSWS_00792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wso03019
]
WSWS_00792
Messenger RNA biogenesis [BR:
wso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WSWS_00792
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
P8
Motif
Other DBs
NCBI-ProteinID:
AOT56428
UniProt:
A0A288QTP2
LinkDB
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Position
complement(835594..837465)
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AA seq
623 aa
AA seq
DB search
MSNTTLSVMPFGGLRENGKNMYAVTVDEDIFILDAGLKYPESDLLGVDVVIPDFQYLVEH
QDKVAGIFLTHGHADAIGALPYLLSEMSVPVFGSEITIELAKLAIEAEPLTKDFNDYHIV
RGDQEVEFGDVTVSFFETTHTIPESLGIVIGTPEGQIVYTGDFKFDTTASPYYRTDLLRL
AEIGRKGVKALLIDAAGTANIGQSAHESEIATYIYDGMHHHKGRIIVAAVASNIQRIQQV
IDASYKVGRKIVLSGNDLEKVVRTALRLKKLSLPVPENELFVSLKNMAKLTPEETVILET
GKMGEPIRHLQRMAHGDDRSIQIQKGDLVFITTTPSTAMEGIVARTRDSLFRAGADVKQI
STDLKSSGHASKNDFQFMLNLLKPENVIPVQGEYRVLNAAAHAAKEVGYTEAHTFILKNG
DNLQLTAEPVLTGSIQVGSTMIDGSGVGDIGSIVLNDRRILSEDGVLIAVVTIDRKKKKV
VAAPKIDSRGFVYVKTSRDLMHEAGELVQNTVADGIKNTKEFDWGNLKNSVRDVLGKYLY
EQTRRKPVILPVIMEANQNGRRRKKPKSAHADNQPNQGNAPTPAVNVNQPAQTGDGEAKK
KRRPRRRKPKNPATVAPVATQEN
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacacgacattaagcgtaatgccgttcggtggtttgcgtgaaaacgggaaaaac
atgtatgccgtaacggttgatgaagatatttttattttagatgctgggttaaagtaccca
gaaagtgatttgttgggtgtggacgtagtcattcctgacttccaatacttagttgaacac
caagataaggtggccggcatctttttgacgcatggtcatgcggatgccattggggccttg
ccatacttattgtcagagatgtctgtccctgtttttggttcagaaatcaccattgaattg
gcaaaattggccattgaagcagaacctttgacgaaggactttaatgattaccacattgtg
cgtggtgatcaagaagtggaatttggagatgttaccgtctcattctttgaaacgacccat
acgatcccagagtctttggggattgttattgggacaccagaggggcaaattgtttatact
ggtgacttcaagtttgataccacagcgtcaccatactaccggactgatttattgcgctta
gctgaaattggacgtaagggtgtgaaggccttgttgattgatgcggctgggacggctaac
attggtcagtctgcgcatgaatccgaaattgcgacgtacatttatgatggcatgcatcat
cataagggacgcatcattgtggctgcagtggcttcaaacatccaacgtatccaacaagtc
attgacgccagttataaggttgggcgtaaaatcgtcctttctgggaatgatctagaaaag
gttgtgcgcacggcgctacgcttgaagaagttgagcctgccggtaccagaaaatgaactc
tttgtttcattgaagaacatggccaagttgacacctgaagaaacggtcatcctagaaact
ggtaagatgggggaacccatccgccacttacaacggatggcccatggtgatgaccggagc
attcaaatccaaaagggtgatttggtctttattacaacgaccccatcaacagcgatggag
ggaattgtggcccgtacgcgtgactcacttttccgtgctggggctgatgtgaagcaaatc
tcaactgatttgaagtcttcagggcatgcctcgaagaacgatttccaatttatgttaaac
ttgctcaagccggaaaatgtcattccagtgcagggggagtaccgggtcttaaacgccgcg
gctcatgcagctaaggaagtgggttacaccgaggcacataccttcatccttaagaatggt
gacaacttgcaattgacagccgagcctgtcttgactggttcaatccaagttggttcaacg
atgattgacggttctggcgtgggtgatattggttcaatcgtcttgaacgatcgccgcatt
ttgtcagaagatggcgtgttaatcgccgttgttaccattgatcgtaaaaagaaaaaggtg
gtggccgcaccaaagattgattcacgtggctttgtttacgtgaagacttcgcgggatttg
atgcatgaagcgggtgaattagtgcaaaatacggttgctgatggcatcaagaataccaag
gaatttgattggggtaacttaaaaaattctgtccgtgatgttttaggtaagtacttgtac
gaacaaacacgtcgtaagcccgtgattttgccggttattatggaggcaaaccaaaacggt
cgtcgtcgtaagaagcctaagtcagcccatgctgataatcaaccaaatcaagggaacgca
ccaacgcctgcggttaatgtgaaccaaccagcccaaacgggtgatggggaagcgaagaag
aagcgccgtcctcgtcgtcgtaagcctaaaaacccggcgacagttgcaccggtagcaaca
caagaaaactaa
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