Weissella soli: WSWS_01377
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Entry
WSWS_01377 CDS
T06066
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
wso
Weissella soli
Pathway
wso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WSWS_01377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wso03019
]
WSWS_01377
03009 Ribosome biogenesis [BR:
wso03009
]
WSWS_01377
Enzymes [BR:
wso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WSWS_01377
Messenger RNA biogenesis [BR:
wso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WSWS_01377
Ribosome biogenesis [BR:
wso03009
]
Prokaryotic type
rRNA helicases
WSWS_01377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_22
DUF2325
Motif
Other DBs
NCBI-ProteinID:
AOT56976
UniProt:
A0A288QP07
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All DBs
Position
complement(1405203..1406768)
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AA seq
521 aa
AA seq
DB search
MKFSELGLSEDLLTAIVKHGYVEATPIQEQTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL
NNVDTDNYDVQALVVSPTRELAIQTQDELFKLGRDKRVRVQAVFGGADIRRQINGLKSGA
HIVVGTPGRLIDHIRRGTINLSKVKTLVLDEADEMLNMGFLEDIEAILTAVPDERQTLLF
SATMPPAIKRIGVQFMTNPEHIQVAAKELTTDLVEQFYVRVREQEKFDTLTRILDVQQPK
LAILFGRTKRRVDELARGLELRGFNAAGIHGDLTQQKRSQVLKQFKAGEIKILVATDVAA
RGLDVSGVDYVYNFDIPQDPESYVHRIGRTGRAGAHGTSVTFITSYEMDYLKDIEKLTKK
RMLALKPYTREEATAARMKNAIADADAVVAKTDAASVTDAADELVAKYDAKTLAAALLGA
IANVSEMDADFELSRERPLPRKRSFGGGGGSRNGGGSRRSGNGGGGFRGRREGDRDNDRS
GDRRRKSFDRGARTGSGDRSQRGKSGAPRARRSFVIKDNQD
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
ttgaagttttcagaattaggtctatcagaagacctacttacagccattgtaaagcatggc
tatgtcgaagccacaccaattcaagagcagacaattccattgacgcttgccggtaaagat
gttatcggtcaagcacaaacgggaactggtaaaacagccgcctttggattgcctatcctg
aataatgtggatacggacaattatgatgttcaagcacttgtcgtatcaccaacacgtgaa
ttggctattcaaactcaagatgagctattcaagttgggacgcgataagcgcgtgcgtgta
caagcagtctttggtggggcagacattcgtcgccaaatcaatggtttgaagagcggtgca
cacattgtcgttgggacacctggtcgtttgatagaccacattcgtcgtggcacgatcaat
ttatcaaaggttaagactttggtattggacgaagccgacgaaatgctgaacatgggattc
ttggaagatattgaagcaattttgactgccgttcctgacgaacgtcagacattgttgttc
tcagccacgatgccaccagctatcaagcgtattggtgtgcaattcatgacgaacccagaa
cacattcaagttgctgctaaagaattaaccactgatttggttgaacaattctatgttcgt
gtacgtgaacaagaaaagtttgatactttgacgcgtattttggatgttcaacaaccaaag
ttggcgattttgttcggtcgtacaaagcgtcgagttgacgaattggcccgtggtttggaa
ttgcgtggctttaacgccgctggaattcacggtgacttgacacaacaaaagcgttcacaa
gttttgaagcaattcaaggctggtgaaatcaagattttggttgcgacagacgttgctgcc
cgtggtttggacgtttcaggtgtggactatgtgtacaattttgatattccacaggatcct
gaatcatatgttcaccgtatcggccgtactggtcgtgccggggcccatggaacttcagta
actttcatcacttcatatgagatggattacttgaaggatatcgagaagttgacgaaaaag
cgtatgttggctttgaagccatacactcgtgaagaagcaactgcagctcgtatgaagaat
gcaattgctgatgctgacgccgtagttgctaagacagatgcagcttctgtcacagatgct
gctgatgaattggtagcaaagtatgatgctaagactttggctgcagctttgttgggtgcc
attgctaatgtatctgaaatggatgctgatttcgaattgtcacgtgagcgtccattgcct
cgcaagcgttcattcggcggtggcggtggttcacgtaatggtggtggcagccgtcgtagc
ggaaacggtggcggtggcttccgtggccgtcgtgaaggtgaccgtgataacgaccgtagt
ggtgatcgtcgtcgtaagtcatttgaccgtggcgctcgtactggttctggtgatcgttca
caacgtggtaagagtggtgcacctcgtgcacgccgttcattcgttattaaagataatcaa
gactaa
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