Wolinella succinogenes: WS1239
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Entry
WS1239 CDS
T00146
Symbol
MFD
Name
(GenBank) TRANSCRIPTION-REPAIR COUPLING FACTOR
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
wsu
Wolinella succinogenes
Pathway
wsu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WS1239 (MFD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wsu03400
]
WS1239 (MFD)
Enzymes [BR:
wsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WS1239 (MFD)
DNA repair and recombination proteins [BR:
wsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WS1239 (MFD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CAE10319
UniProt:
Q7M928
LinkDB
All DBs
Position
complement(1189424..1192408)
Genome browser
AA seq
994 aa
AA seq
DB search
MIQSSLYHALKNPFPYQILITQDDKESYLASEVARFRGFETILFPDFRAQKGDDLRSYKE
ELLALLGALRKWYRAPKERLLLIAPLRSLLHPLPKEELLQSFHLGFGDNLDIGELKERFY
RFGYEFVEIIELPGEVSFRGDIIDVFPPQESSPVRLSLFDTQIESLRYFDLETQMCEREE
LDRIEITPALFALDEATQKELEELVSASSYGAFSKDLMSLGLWYLKDKGEVLPRRVPSIL
TAGAKEELLELLELQESDELRFLEGLNLLATPLEHSDIIISPANFLSFLSLHANKEITII
ARNEALFRAFDLKEIPCKKQIGDFCVNLLTPKEVILSLNQNTKKSAKKRRPTFAIDELRV
GDYVVHKDYGIGIFKGIIQERVLGALRDFILLAYQGEDRLLLPVENLDYIDRYVADSGSI
PSVDRLGKGSFAKLKEKIRTKLLEIASEIVALAAKRELIEGRAIRTDFPEIEIFQHSSGF
VYTSDQEKSIREIFSDLEGGKVMDRLLSGDVGFGKTEVAMNAILATVMSGYQAALVAPTT
LLAHQHFQSLKKRFEGRGIKMARLDRFLSSKERTSLLNALKEGEVDVVVGTHAILSAVFK
RLALIIVDEEHKFGVKQKERIKAIAQDVHMLSMSATPIPRTLNMALSSIKGMSTLLTPPS
EKLPVRTFVKEYQEALLKEIVHREIRRGGQIFYIHNNIATIERRQKELLELMPNLKIAIL
HSQIPEKETEEIMLAFEEGRYHLLLSTSIIESGIHLPNANTIIIDSSDRFGIADLHQLRG
RVGRGSKEGFCYFLVEEKESLTPEAKKRLLALESNSFLGSGSVLAYHDLEIRGGGNLLGE
AQSGHIKGIGYALYLKMLEEAIHSLSSKALPKREDVDLKLSINAFLSPELIESDRLRLEL
YRRLSRCESTQEVNEIEVEIHDRFGSPDLYTKQFLELILIKVLASLQGIKTITNYNQNIT
FFYRDETKKSFSAKSRDDDDLLAAILEQLQGKSA
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
ttgatccaaagtagtctatatcacgccttaaagaatccctttccctatcagattctcatt
acccaagatgacaaagagagctatctcgcctctgaagtggcacgctttaggggttttgag
acgattcttttccccgattttagagcccaaaagggcgatgatctaaggagctacaaagag
gagctactcgcccttcttggggcgcttagaaaatggtatagagcgcccaaagagcgccta
ttgcttattgctcctttgcgctctctcctccatcctctccccaaagaagagttacttcaa
agcttccatttaggttttggtgacaatctggatattggggagctcaaagagcgattctat
cgatttggttatgaatttgtggagatcattgagcttcctggagaggtctcatttcgtgga
gacatcattgatgtttttcctcctcaagaatcctcccctgtgcgccttagcctctttgat
acacagattgagagccttcgatattttgatttagagacgcagatgtgcgagagggaggag
ctagatcgaatcgagatcactcctgcgctctttgcgctggacgaagcgacccaaaaggag
cttgaggagctggtgagtgcctcaagctatggggctttttctaaggatctgatgagcctt
ggactatggtacttaaaggacaagggcgaagtattgccaaggcgtgtgccctcgattctc
accgcaggagccaaagaggagctcttggagcttctggagctacaagagagcgatgaactc
cgctttttggagggcttaaaccttctagccactcctttagagcatagcgatatcatcatc
tctcctgccaattttctctcttttctttcgcttcatgccaataaagagatcacgattatt
gctagaaacgaggcgctttttagggcgtttgacctcaaggagattccttgcaaaaagcag
attggcgacttttgtgttaatttgctcacccccaaagaggtgattctctccctcaaccaa
aacaccaaaaaaagcgccaaaaaaagacgacccacctttgccatcgatgagcttcgcgtg
ggggattatgtcgtccataaagattatggaatcggaatctttaaaggaatcatccaagag
cgagttttgggggctttgagagatttcattctcttggcctatcagggagaagaccgactc
ctgctccccgtggaaaatctcgactatattgatcgttatgtagctgatagtggctcgatt
ccttcggtggaccgccttggaaaaggaagctttgccaaactcaaagagaagattcgaaca
aaacttttagagattgcaagcgagattgtcgctctagcggccaaacgagagctcattgag
gggagggcgattcgcacggatttccctgagattgagatttttcagcactctagcggattt
gtctataccagcgaccaagagaagagcatccgcgagatattctctgacctagagggcggg
aaggtgatggatcgactccttagcggagatgtaggttttggcaaaactgaagtggcgatg
aatgcgattcttgcaaccgtgatgagcggctatcaggcggccttggttgctcctacaact
cttttggcgcaccaacacttccaaagccttaaaaaacgctttgaggggcgtggcatcaag
atggctcgcctggatcgattcctaagtagcaaagagcgcaccagcctactgaacgccctc
aaagagggggaagtggatgtggtcgttggaactcacgccatcctctcggctgtttttaaa
cgcctagcgctcatcatcgtggatgaggagcataaatttggcgtgaagcaaaaagagcgt
attaaagcgattgctcaagatgttcatatgctctccatgagcgctacacccattcctcga
acgctcaatatggcgctctctagcattaaagggatgagcacactcctcacccctccaagc
gagaagctccctgtgcgcacttttgtcaaagagtatcaagaggcacttttaaaagagatc
gtccatcgagagattcggcgaggggggcagattttttacattcataacaatatcgccacc
attgagcgtcgccaaaaagagctcttggagctgatgccaaacctcaaaatcgccatcctt
cactctcaaatccccgaaaaagagacggaagagatcatgctagcctttgaagaggggcga
tatcacctgctcctctccacctccattatcgaatcgggcatccatctccctaatgccaac
acgatcattattgattcaagcgatcgatttggaatcgccgacctccaccagctgcggggt
cgtgtaggacgaggaagcaaagagggattctgctatttcctcgtagaagagaaagaatcg
ctcacgcccgaagccaaaaagcgtcttttggcgctagagagtaactccttcttggggagt
ggttcggtgctcgcctatcatgatttggagattcggggcgggggaaatctcctgggtgag
gcgcaaagtggccacatcaagggaattggctatgccctctatctcaaaatgctcgaagag
gcgattcactcactcagttccaaggcgcttcctaagcgggaggatgtggatctcaagctc
tccatcaacgcctttctctcccctgagctcatcgagagcgatcgtttgcgcttagagctc
tatcgccgcctctcccgctgtgagagcacccaagaggtgaacgagatagaggtggaaatc
cacgatcgattcggctcacccgacctctacaccaagcagtttttagagctcatcctcatt
aaggtgctcgcctccctgcaaggaatcaagaccatcaccaactacaatcaaaacatcacc
ttcttctatcgtgatgagaccaaaaagagcttcagcgccaaaagtcgggatgacgatgat
ctcttggcggctattttggagcaactacaaggaaaaagtgcgtga
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