Wolinella succinogenes: WS1482
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Entry
WS1482 CDS
T00146
Name
(GenBank) ATP-DEPENDENT RNA HELICASE, DEAD-BOX FAMILY DEAD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
wsu
Wolinella succinogenes
Pathway
wsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WS1482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wsu03019
]
WS1482
03009 Ribosome biogenesis [BR:
wsu03009
]
WS1482
Enzymes [BR:
wsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WS1482
Messenger RNA biogenesis [BR:
wsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WS1482
Ribosome biogenesis [BR:
wsu03009
]
Prokaryotic type
rRNA helicases
WS1482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_19
Cas3-like_C_2
Utp25_C
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
CAE10536
UniProt:
Q7M8Q7
LinkDB
All DBs
Position
1418982..1420499
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AA seq
505 aa
AA seq
DB search
MDNHVNAHEEQEQAGFEQFGFKENLLRGIHEAGFKVPSPIQVEAIPLVLGGHDLIAQAQT
GTGKTAAFGLPIIQNLKNDGSIEALIITPTRELAVQISDEIFKLGRNCRTKTVSVYGGQA
IRRQVELLEKAPQVIIATPGRLLDHLRNDRLKNFNPTTIVLDESDEMLDMGFLDDIEEIF
TYLPASRQTLLFSATMPAPIKNLAQKILHNPKMVKVTTNETTNSDISQRYYIINEYERED
AIVRLIDSEAPSKTIIFTRMKKEADDLSNRLIAKGYQAGALHGDMEQRERQAAVNAFKQG
AIDILVATDVAARGLDISNVSHVFNYHIPLNPESYVHRIGRTGRAGKKGIAITLATPLEF
KEIRRISETTKATIELYEIPTIAETLKQTDSKLIQNLLNHSITDDALRIYEQIRGEIDTT
QLACKLLSMLMKKSSIMGPNKIGLSKEDLMQLKNRLSGDDRRDRNSRGGKGGSRGGSRNS
GGYRRDSRDGNRSSEGNYSRRKRRD
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggataaccacgtaaacgcacacgaagagcaagagcaagcaggatttgagcagtttggc
ttcaaagagaatcttcttagagggattcacgaagcaggcttcaaagttcctagccccatc
caagtcgaagccattcccttggttcttggaggccacgacctcatcgctcaagctcaaaca
gggacaggcaaaacggctgccttcggactccctatcatccaaaacctcaaaaatgatggc
tccattgaagcccttatcatcactcctacgcgagagctcgctgtccaaatcagtgatgaa
attttcaaactcggccgcaactgccgcaccaaaaccgtctccgtctatggcggtcaagcg
attcgacgccaggttgagctcctagagaaagctccccaagtcatcatcgctacccccgga
cgacttcttgatcacttaagaaatgatcgactcaaaaatttcaaccccaccactatcgtc
ttagacgaatccgatgagatgcttgatatgggattcctcgatgatatcgaagagattttc
acctacctgcccgctagtcgccaaacccttctcttctctgcgaccatgcccgcccccatc
aagaacctcgctcaaaagattctccacaaccccaaaatggtgaaggtgaccaccaacgaa
accaccaacagtgacatctcccaacgctactacatcatcaatgaatatgagcgcgaagat
gcgattgtgcggctcatcgatagcgaagcgcccagcaaaaccatcatcttcacccgaatg
aaaaaagaggccgatgacctctccaatcgacttatcgctaagggctaccaagcaggagcg
cttcatggtgatatggaacaacgagagcgccaagctgcggtgaacgccttcaaacaaggg
gcgattgatattcttgtggccaccgatgtagcggcacgaggactcgatatcagcaatgta
agccatgtctttaactaccacatccccctcaatcccgagagttatgtccaccgaatcggg
cgaacaggccgcgcaggtaaaaaagggatcgctatcacgctcgccactcctttggaattt
aaagagattcgacgaatctctgaaaccaccaaagccacgattgagctctatgaaattccc
accatcgctgagaccctcaagcagaccgattctaagctcattcaaaatcttctcaaccac
tccatcaccgatgatgccctccgaatctatgagcagattcgaggagagattgacaccacg
cagcttgcgtgcaaactcctctccatgctcatgaaaaagagttctatcatggggcccaac
aagattggtctctccaaagaggatcttatgcagctcaaaaaccgcctaagtggcgatgat
aggcgcgatcgaaactctagaggaggcaaagggggctctagaggaggctctagaaactcc
ggcggctaccgaagagatagccgtgatgggaatcgctcctctgagggcaactactctaga
cgcaaaagacgcgactaa
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