Weissella tructae W-1: KHQ32_03885
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Entry
KHQ32_03885 CDS
T08629
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
wtr
Weissella tructae W-1
Pathway
wtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KHQ32_03885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wtr03019
]
KHQ32_03885
03400 DNA repair and recombination proteins [BR:
wtr03400
]
KHQ32_03885
Enzymes [BR:
wtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KHQ32_03885
Messenger RNA biogenesis [BR:
wtr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KHQ32_03885
DNA repair and recombination proteins [BR:
wtr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KHQ32_03885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
TniB
Motif
Other DBs
NCBI-ProteinID:
QVV90784
LinkDB
All DBs
Position
complement(798154..799593)
Genome browser
AA seq
479 aa
AA seq
DB search
MISEQNVLQTLKSRFGFDAFKPGQSEIISALLADESVMAMLPTGGGKSLIYQMVGYLRPG
VTIIVTPLLSLMQDQVARLNYQGERAVVAFNSTLTGYERQRVLARLGQYRFVFISPEMLS
QEDVISAFQQVDINLMVIDEAHTMLTWGPDFRPDYLALPQIHERLNTPQLLLLTATATPE
MLAKLKDDFAKETRKWFTYVESVNRPNIYLHTEHFTQRQDKKERLASLITTLKGPGLVYF
SSRKQATAMARELQRETGKRIAAYHGGLESTERFRIQQQFMLGQLDVIMATSAFGMGIDK
DNIRYVIHYHMSSDIPNYLQEFGRAGRNGDTAVAILLFAPGDEQLHYGLIDQTIPEKQAI
QAFYETGRIKSPEQQRLLAYYQQAGYSEIDVKNIMAERREKRYADLDKMRQYANANGRLR
EQILMFFSESIQEEQKAFESVGQRKWHPEELGLVGETVPETTTELLDWQQQLQKMFKKR
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgataagtgagcaaaatgtcttacaaacattaaagtcacgttttggttttgatgctttt
aaaccagggcagtcagaaatcatttccgcattattagcggatgaatcagtcatggccatg
ttaccaacaggtggtggtaaatcgttgatttatcagatggttggttacttacgcccgggg
gtcacaattattgtgacgcctctgttgtcgttgatgcaagaccaagttgcacgcttgaat
tatcaaggtgaacgcgctgtcgtggcctttaattcgaccttaacgggttacgaacgacaa
cgtgttttagcacgattgggtcagtatcgattcgtgttcatttcgccagaaatgctgagt
caagaagatgttatcagtgcatttcagcaagttgacattaatttgatggtcattgatgag
gcccacacaatgttgacttggggaccggattttaggcctgattatctcgccttaccacag
atacatgagcgcttaaacacaccgcaattactcttgcttacggcaacagcaacaccagaa
atgttagcaaaattgaaggatgattttgcaaaggaaacacgtaaatggttcacctatgtg
gaatcagttaaccgaccaaatatctatttacacacggagcactttacacaacgccaagac
aaaaaagaacggttagccagtttaattacgactttaaaaggaccaggattagtgtatttt
tcaagtcggaagcaagcaacggcgatggcgcgtgagttacaacgtgagacgggtaaacgg
attgctgcatatcatggtggtttggagagtacggaacgattccgaattcaacaacagttt
atgttaggccagctagatgttattatggcgacttcagcatttggtatggggattgataaa
gataatattcgctatgtcattcattatcatatgagtagtgacattccgaattatctccag
gaatttggccgggcaggtcgaaatggggacaccgcggtggcgattttgttgtttgcaccg
ggggatgaacaattacactatggattaattgatcaaacgattcctgaaaaacaagcaatt
caagcgttttatgaaacaggacgaattaaatcacctgaacaacaacgcttactcgcatat
tatcaacaggcgggctactcagagatagatgtgaaaaacatcatggcagagagacgcgaa
aaaaggtatgctgatttagacaaaatgcgccagtatgccaatgccaacgggcgattacgc
gagcaaattttaatgttctttagtgaatcgatacaggaagaacaaaaagcatttgaatct
gtgggacaacgtaaatggcaccccgaagaattgggcttagttggggaaacggtgcctgaa
acgacaactgaattactagattggcagcaacagctacagaaaatgtttaagaaaaggtaa
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