Weeksella virosa: Weevi_0173
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Entry
Weevi_0173 CDS
T01441
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
wvi
Weeksella virosa
Pathway
wvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Weevi_0173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wvi03019
]
Weevi_0173
03009 Ribosome biogenesis [BR:
wvi03009
]
Weevi_0173
Enzymes [BR:
wvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Weevi_0173
Messenger RNA biogenesis [BR:
wvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Weevi_0173
Ribosome biogenesis [BR:
wvi03009
]
Prokaryotic type
rRNA helicases
Weevi_0173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADX66897
UniProt:
F0NXC3
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All DBs
Position
complement(164735..166495)
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AA seq
586 aa
AA seq
DB search
MTFKDLGLQPEILSAVEDMGFVSPSPIQEKAIPQILSSDQDVIALAQTGTGKTAAFGLPI
LNQLDLSQKNVQAIILCPTRELCLQIAKEMESFAAHMQGVKIQAVYGGADIVKQIKGLRD
NPQIVVGTPGRTMDLIKRNALKINNITWTVLDEADEMLNMGFRDEIDNILETTPEEKQTL
LFSATMPREVRRIAAEYMFKPVEIAVSKVNMASKNIEHQYYMVRASDRYLALKRIADYYP
SIYGIVFCKTRRETKEVADRLMQDGYNADALHGDLSQAQRDFVMDKFRKKNIQILVATDV
AARGIDVNELTHVINYSLPDDPEVYVHRSGRTGRAGNKGISIIIAHSREGRKVKDVEKFI
SAPIELKKVPSGEEICERRMFNLIEKIENTEVDDIQIEPYMDAVYEKLQGLDRDELIKRF
VSAEFNTYLEYYKNSKDLNESESSRGEGRERGRRSNKNFTRFYINLGEKHRVKAPNLIGM
INEFTRNRNIEIGKIEILRNFSFFEVEDEFTQTILDSFNGKDRDGIEIDVQISKPEPNRL
YDNNRSGRRDRKRSDFRGARRGNDRKKNGGDRRSNNSRRERGGKRR
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgacattcaaagatttaggtcttcaaccagaaattttatctgccgtagaagatatggga
ttcgttagcccatcacccattcaagaaaaagcaattccacaaattttatcttcagatcaa
gatgtgattgccttggcacaaaccggtaccggaaaaactgccgcgtttggattaccgatt
cttaatcaactcgatttatctcaaaaaaacgttcaggcgattatcctttgtccaactcgt
gaactttgtttgcagattgccaaagaaatggaaagttttgctgcccatatgcagggagta
aaaatacaagctgtttacggtggtgcagatattgtgaagcaaataaaaggtttgcgagat
aatccacaaatcgtcgtcggaacaccgggtcggactatggatttgatcaagcgtaatgca
ttgaaaattaacaatatcacatggactgtattagacgaagcagacgagatgttgaacatg
ggatttcgggatgagatagataatatcctagaaacaacaccagaagaaaaacaaacctta
ttgttttcggctaccatgccacgggaagtaagacgtattgctgcagaatacatgttcaaa
cctgtagaaattgcggtgagtaaagtaaacatggcgtcgaaaaatatcgaacatcaatac
tatatggtgcgtgcaagcgatcgttatttagcactaaaacgaatagctgattattatcca
agcatttacggtattgtattttgtaaaacaagacgagaaaccaaagaagttgctgatcgt
ttgatgcaagacggatacaatgcagatgcattacatggagatttatcgcaagcacaacgt
gattttgtgatggataaatttcgtaagaaaaacatacaaattcttgtcgcaactgacgtt
gcagcccgaggaattgatgttaacgaattaacgcatgtaatcaactatagtttaccggat
gatccagaagtgtatgttcaccgttcgggtcgtacagggcgtgccggtaacaaaggtatt
tctattattattgcacactctagagaaggtagaaaagtaaaagatgttgaaaaatttatt
tctgcccctatcgaacttaagaaagttccgagtggggaagaaatctgtgaaagacgtatg
tttaatttaatcgagaaaatagaaaacacagaagttgatgacatacaaatagaaccttac
atggatgctgtgtatgagaaacttcaaggtttggatcgtgacgaattaatcaaacgtttc
gtttctgcagaattcaatacatatttagagtattataaaaactcaaaagaccttaacgaa
tctgaaagcagtagaggagaaggacgagaaagaggccgtcgttcgaataaaaactttact
cgtttctatatcaatttaggagaaaaacatcgtgtaaaagcaccaaaccttattgggatg
atcaacgagtttacacgcaatagaaatatagaaataggtaaaatagaaatcctgagaaat
ttttcatttttcgaagtagaagacgaatttacccaaacaattctagattcttttaacgga
aaagatcgtgacggaatagaaatagatgtgcaaatttcgaaaccagaaccaaatcgatta
tatgacaataatcgcagcggaagaagagatagaaaacgttctgattttcgtggcgctcgt
cgtggaaatgaccgaaaaaaaaatggcggtgatcgtcgatcaaacaactcaagaagagaa
cgtggcggaaagcgtcgataa
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