Weeksella virosa: Weevi_0802
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Entry
Weevi_0802 CDS
T01441
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
wvi
Weeksella virosa
Pathway
wvi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Weevi_0802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wvi03400
]
Weevi_0802
Enzymes [BR:
wvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Weevi_0802
DNA repair and recombination proteins [BR:
wvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Weevi_0802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
ANKH
RecG_dom3_C
RE_LlaMI
UB2H
T4BSS_DotI_IcmL
Motif
Other DBs
NCBI-ProteinID:
ADX67515
UniProt:
F0P0V1
LinkDB
All DBs
Position
837664..841008
Genome browser
AA seq
1114 aa
AA seq
DB search
MNLYQTSGFVKDLVAYSQKEEKQKIHIKGFLGSALSFAIAQLYLQTNRSILMVTDDKEEA
AYWLNDLEALLNQEQVLFYPSAYRTPYHIEETNNANVVIRTEVLNQLTSHSSPKIIVAYA
DALTEKVITKKALSTNTLKIKVGTELGLDFIRDMLFSYNFRQVDFVNEPGEFSIRGGIID
IFSFADEHPYRISMFGDEVETIRSFDTSTQLSISTTKEIKIIPNLEDKQFDEKRISFLEY
LHKDTMIIAKNLGVITSKLENNYSLAENAFANLSSEISRLAPADLFFSSVQFQEKLELFT
VFEMSSTPHLSINHTLESPYKPQPSFNKQFDFLIDDLNYHTQQGYKNALVCFNEAQVKRF
AEIFEDVGKEVSYIPVIGSLHQGFIDEELKITCYTDHQIFERYHKFNLRNSFSKKEAITL
KEINSLQVGDYVTHIDYGIGKFAGLVRIENNGVQQESIKLFYQNNDILYVNIHSLHKISK
FRGKDGVEPKISKLGSPAWRNLKNKTKTKVKEIAFDLIKLYAKRRTQKGFAFSPDTYLQN
ELEASFIYEDTPDQEKATLDVKNDMESERPMDRLVCGDVGFGKTEVAIRAAFKAAVDGKQ
VAVLVPTTILAFQHFKTFTDRLKEFPVQIEYLNRFTTTKKKNAILADLEAGKVDIIIGTH
QLVNPKVKFKDLGLLIIDEEHKFGVSVKDKLKTLRANIDTLTLTATPIPRTLQFSLMAAR
DLSVIKTPPPNRQPVETNLIEFNEEAIRDAILYEMQRGGQIFFIHNRVQTLKEIAGMVQR
LVPDARIATGHGQMDGKQLEAIMLDFIDGQYDVLISTTIIESGLDVPNANTILINDAQNF
GLADLHQMRGRVGRSNRKAFCYLIAPPVSVLTNEARKRLQAIEQFSDLGSGFNIAMKDLE
IRGAGNLLGAEQTGFMMEIGFETYQKILNEAIEELKESDFKELFEHEKTSNFIEYVKDVQ
VDTDLEILIPDEYVNNVEERLALYNELASIETAEELSKFENNLIDRFGPIPSPVENLLQS
IKLKWKGKELGMERIVLKNGKLTAYFVNKPNNNYFQSEKFRLILNYVQSYPQNVNFREKP
AKNSSELPSLLLKIDHVKNVSNALKHFEKMLNQQ
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgaacctttaccaaacctcaggttttgtaaaggatttagtggcttatagccaaaaagaa
gaaaaacagaaaatccatatcaaaggatttttaggttcggcgttgagttttgcaattgca
caactgtatttgcaaaccaatcgttctattttgatggtgaccgatgacaaagaagaagcc
gcctattggctaaatgacctcgaagcactactcaaccaggagcaagtactcttctaccca
agtgcttaccgaactccataccatatagaagaaaccaacaatgcaaatgtagtgatccgt
acagaagttctcaatcaattaacttcacacagctcaccaaaaattattgttgcttatgcc
gatgcactcaccgagaaagttattaccaaaaaagcactttctacaaataccttaaaaata
aaagtaggcaccgaactaggcttggattttatccgagatatgttgttttcgtacaacttt
cggcaagtagattttgttaacgaaccaggagaattctctattcgcggtggaattatcgat
attttttcttttgcagacgaacacccttatagaatttctatgtttggcgatgaagtggaa
acgattcgttcttttgataccagcacacaactctcgatttcgacaaccaaagaaatcaaa
atcattccaaatttagaagataaacaattcgatgaaaaacgaataagttttttagaatat
ctccacaaagacaccatgattatcgccaaaaatttgggagttatcacatcgaagttagaa
aataattactctttagcagaaaatgcctttgcaaatctatctagtgaaatatctcgattg
gctccggccgatttattttttagttcggtacagtttcaggagaaactcgaactatttacc
gttttcgagatgtcatcaactccccatttatcaataaatcatactctagaatctccctac
aaaccacaaccttccttcaacaaacaattcgattttctgatcgatgatctcaactaccac
acccagcaaggttacaagaacgcactggtttgttttaatgaagcacaggtgaaacgattt
gcagaaatttttgaagatgtaggaaaagaagtgagttatattcctgtaatcggttctttg
catcaaggttttatcgatgaagaactgaaaattacttgctatacagatcatcaaattttc
gagcgttatcataaattcaacctaagaaattcgttttcgaaaaaagaagcgattactcta
aaagaaatcaactctcttcaggtaggtgattatgtgacgcatatcgactatggtatcggg
aaatttgcaggattagttaggatagaaaacaacggcgtacagcaagaaagcatcaagcta
ttctaccaaaacaatgatattttatatgtcaatatccactctttgcacaagatttctaaa
tttagaggaaaagatggtgtcgaaccaaaaatcagcaaattgggttccccagcttggaga
aaccttaaaaacaaaaccaaaacaaaagtaaaggaaattgcttttgatttgataaaacta
tacgccaaaagacgcacccaaaaaggatttgctttctcaccagacacctatttacaaaat
gaactagaagcatcattcatttacgaagacacacccgaccaagaaaaagcaacattggat
gtaaaaaacgacatggagtctgagcgtcccatggatcgtttggtatgcggcgatgtaggt
ttcggaaagacagaagtcgctataagagcagctttcaaagctgcggtagatggaaaacag
gttgctgttttggtacctacaacaatattagcatttcaacatttcaagacgtttacagat
cgactaaaagagtttcccgtgcaaatagaatacctcaatcgttttacgacaaccaaaaag
aaaaatgcaattcttgcagatttagaagctgggaaagtcgacatcattatcgggacacac
caattggttaatcctaaagtgaaattcaaagatttgggacttttgattattgatgaagaa
cacaaatttggggtaagtgtaaaggataaattaaaaaccttacgagcaaacatcgacacc
ttaactctaacagccaccccaattccgcgcactttacaattctcgcttatggctgcccgt
gacctgtcagttatcaaaactccaccaccgaacagacaaccagttgaaaccaacttaata
gaattcaatgaggaagcaattcgcgatgcgattttgtatgaaatgcaacgcggcggtcaa
atttttttcattcataatcgagtacaaactcttaaagaaattgccgggatggtccaacgt
ttagttcctgatgcccgtattgcaacagggcatgggcaaatggacgggaagcaactcgaa
gccatcatgctcgattttattgacggacaatacgatgtgcttatctctaccaccatcatc
gagtctggtttagatgtaccaaacgcgaatactatcctaataaacgatgcacaaaacttt
ggcttagccgacctgcatcagatgcgtggacgtgtaggccgaagcaaccgaaaagctttt
tgttatttgattgcccctcctgtttctgtcttgaccaatgaagcaagaaaacgcttacaa
gctatagaacaattttctgatttagggtctgggttcaacattgctatgaaagacttagaa
attcgtggcgctggaaaccttttgggtgccgaacaaactggttttatgatggaaatcgga
ttcgaaacataccagaaaatacttaatgaagcaattgaagagctaaaagaaagcgacttc
aaagaactattcgaacacgaaaagacatccaactttatagaatacgttaaggatgtacaa
gtcgacaccgacttagagattctgattccggatgaatatgtaaacaatgtagaagaacgt
ttggcattatataacgaactagcatcgatagagacagctgaagagctatcgaaattcgaa
aataacctcatcgaccgttttggccctataccttcgccagttgagaatttacttcagtcg
attaaactcaaatggaagggtaaagaactaggcatggaacgtatagtattgaaaaatggg
aaacttactgcatattttgtcaataaaccaaacaacaactatttccaatcagagaaattt
agactgattttaaattatgttcaatcttaccctcaaaatgttaacttcagagaaaaacct
gcaaaaaattcgtctgaattaccaagtttacttttgaagattgatcacgtaaaaaatgta
agtaatgcactaaaacacttcgaaaaaatgctaaatcaacaataa
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