Weissella viridescens: IE337_05210
Help
Entry
IE337_05210 CDS
T06991
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
wvr
Weissella viridescens
Pathway
wvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IE337_05210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wvr03019
]
IE337_05210
03400 DNA repair and recombination proteins [BR:
wvr03400
]
IE337_05210
Enzymes [BR:
wvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IE337_05210
Messenger RNA biogenesis [BR:
wvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IE337_05210
DNA repair and recombination proteins [BR:
wvr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IE337_05210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Helicase_C_2
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
QOD85601
LinkDB
All DBs
Position
complement(1057067..1058506)
Genome browser
AA seq
479 aa
AA seq
DB search
MLNQTDIQATLKQHFGFESFRPGQLEIIEALLRGDAALGMLPTGGGKSLIYQMMGYLRPG
TVVIVTPLLSLMQDQVARFNYLGEKSVVALNSTMDAQEKFTILGHLNRYRFVFISPEMLN
QANVLQAFQRIQINTFVIDEAHTLLSWGPDFRPDYLDLPRVHHLLGAPSLLLLTATATPA
MQEDLKGRFDLGTAQWFTYTESSDRPNIYLHTEELTNQDDKRQRLQFLVHQIPGAGIVYV
SSRKMANSLAEFLRQETGKRVAAYHGGLDNVARYRLQQQFMENQLDVIVATSAFGMGIDK
DDIRFVIHYHLSQDLANYMQEIGRAGRDGQNAVAILLYIKGDERIQQHLIDASLPTDAMI
EGYYAKVLTQRDIGEERARLLDYYGQQKLSVPAIQQLFAERRVVREADLNQMVKYAQSRS
ALRPKLLGYFGEKTSSDFESIGMANWTLTAVGLPAAPKEQPHVNQTDWSTILTKLFKLS
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgcttaatcaaacagatattcaagcaacattaaaacaacattttgggtttgagtcattt
cgaccaggtcagttagagattattgaggcgttacttagaggagatgccgctttgggaatg
ttaccgactggtggtgggaagagtttaatttatcaaatgatggggtatctacgacccggt
acagtggtaatcgtgacgccgctattatcgttgatgcaagatcaggtagcccgttttaat
tatttaggtgaaaaatcggtcgttgcgctcaattcgacgatggatgcacaagagaaattc
accattttaggccatttgaatcgatatcggtttgtctttatttcacctgagatgctaaac
caagccaatgtcctacaagcgtttcaacgtattcaaatcaatacatttgtaattgatgaa
gcgcatacgttgttaagttggggcccggatttccgacctgattaccttgatttaccacgc
gtgcatcatttgctaggtgcgccgagtttactactgctgacagcaacggcgacaccagct
atgcaggaagacttaaaagggcggtttgaccttgggacggcgcagtggttcacttacacg
gaatctagcgatcgcccaaacatttatttacataccgaagaattaaccaaccaggacgat
aaacggcaacggctccagtttttggtgcatcaaattccaggagctggaattgtctatgtt
tctagtcgcaaaatggcgaatagtttggctgaatttttacgtcaagaaaccggcaagcgt
gtagctgcctatcatggtggcttagataacgtggcgcgttatcgtctacaacaacaattt
atggagaatcagttagatgtgattgtcgcaacttcggcttttggtatgggaattgataaa
gacgatattcgatttgttattcactatcatttgagccaagacttggctaattatatgcaa
gaaattggtcgtgccggtcgcgacggtcaaaatgcggtggctatcttactgtatattaag
ggtgatgaacgtattcaacaacatttgattgatgcgtcattaccaacagatgccatgatt
gagggttactatgcaaaagtgttaacgcaacgtgatattggtgaggagcgcgcgcgctta
ctagattactatggacaacaaaaattatctgtaccagcaattcaacagctttttgcagag
cgacgtgtcgtccgcgaggctgatttaaatcagatggttaagtatgctcagtctcgctca
gcactcagaccgaagctactggggtattttggcgaaaaaacatcgagtgatttcgagtcc
attggcatggctaactggacgttgaccgcagtcggattaccagcagcaccaaaagaacaa
ccccatgtaaatcaaacagattggtcgacaattttaacaaaactctttaaattaagttaa
DBGET
integrated database retrieval system
