Weissella viridescens: IE337_07130
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Entry
IE337_07130 CDS
T06991
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
wvr
Weissella viridescens
Pathway
wvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IE337_07130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wvr03019
]
IE337_07130
03009 Ribosome biogenesis [BR:
wvr03009
]
IE337_07130
Enzymes [BR:
wvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IE337_07130
Messenger RNA biogenesis [BR:
wvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IE337_07130
Ribosome biogenesis [BR:
wvr03009
]
Prokaryotic type
rRNA helicases
IE337_07130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QOD86819
LinkDB
All DBs
Position
complement(1435447..1437039)
Genome browser
AA seq
530 aa
AA seq
DB search
MLKFAELGLSEDLLTAITKQGYEEATPIQEKTIPLILEGKDVIGQAQTGTGKTAAFGLPI
LEMLDENNSKPQALIVSPTRELAIQTQDEIFKLGRDKHVRVQAVFGGADIRRQINGLKHG
AQVVVGTPGRLLDHIKRGTVDLSNVKTLVLDEADEMLNMGFLEDIESILKAVPDQRQTLL
FSATMPPAIKRIGVQFMKDPVHVQIEAKELTTDLVEQYYVKVRENEKFDTLTRILDVQNP
QLAIMFGRTKRRVDELTRGLELRGYNAAGIHGDLTQQKRSQVLKQFKNGEISILVATDVA
ARGLDVSGVDYVYNFDIPQDSESYVHRIGRTGRAGHEGTSVTFVTSAEMDYLKDIEKLTK
KRMQPLKPATKEEAIAGRLSQASDKVDKLIKQANPELAENEVDALAEKYDAKTLAAALLG
SVADITDMDAPFSLSRERPLPRKRYGNGGGGSRGGNRRNGNGGGGSRGGYRGGSRGGSRD
GGNRRSGDRDGRRSNGGERRGNGNGGDRRSNGNGGGQSRRSRDFVIKNND
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
attttgaagtttgcagaattaggtctatctgaagacctgttaacagccattacaaaacaa
ggctatgaagaagctaccccaatccaagaaaagactattccattaattttggaaggtaaa
gatgtgattggtcaagctcaaactggaactggtaaaaccgcagcatttggtttgccaatc
cttgaaatgcttgatgagaataactcaaagcctcaagcattgattgtgtcaccaactcgt
gagttggcgattcaaacccaagatgaaattttcaaattgggacgtgacaagcatgttcgt
gtacaagccgttttcggtggtgccgacattcgtcgtcaaattaatggtctaaagcacggc
gctcaagtcgttgttggaacaccaggacgtttgcttgatcacattaagcgtggaaccgtt
gacttgtctaacgtcaagacactggttttggatgaagctgatgaaatgttgaacatggga
ttcttggaagatattgaatctatccttaaggcagtgcctgaccaacgtcagactttgctc
ttctcagcaacaatgccacctgcaatcaagcggattggtgttcagttcatgaaggatcca
gttcacgtacaaatcgaagcgaaggaattgacaactgatttagttgaacaatactacgtt
aaggttcgcgaaaacgaaaaatttgatacattaacacgtattttggatgttcaaaatcca
caattggcgattatgttcggtcgtacaaagcgtcgtgttgatgaattgacacgtgggctt
gaattacgcggatataatgctgccggaattcacggtgatcttacacaacaaaagcgttca
caagttttgaagcaattcaagaatggtgaaatcagcatccttgttgcaactgatgttgca
gcgcgtggattggacgtttctggtgttgattacgtatataactttgatattccacaagat
tctgaatcttatgttcaccgtatcggtcgtactggtcgtgccggacatgaaggtacttca
gttacattcgttacaagtgccgaaatggattacttgaaggatattgaaaagttaactaag
aagcgtatgcaaccattaaagcctgctacaaaggaagaagccattgctggtcgtctttca
caagcaagtgataaggttgataagttaatcaagcaagctaacccagaattagctgaaaac
gaagtggatgcattggctgaaaagtatgatgcaaagactttggcagcagctttgctaggt
tcagttgctgatatcactgatatggatgccccattctcactttcacgtgagcgtccattg
ccacgtaagcgttatggtaatggtggtggcggatcacgtggtggaaaccgtcgtaatggt
aacggtggcggcggatcacgcggtggataccgtggtggttctcgtggcggaagccgtgat
ggtggaaaccgtcgttcaggagaccgtgatggtcgtcgctcaaatggtggcgaacgtcgt
ggtaacggaaatggtggcgatcgccgctcaaacggtaacggtggcggacaatcacgccgt
tcacgtgatttcgtaattaagaacaacgattaa
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