Xanthomonas sp. CFBP 8445: NUG21_09400
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Entry
NUG21_09400 CDS
T11515
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xab Xanthomonas sp. CFBP 8445
Pathway
xab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NUG21_09400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xab03019
]
NUG21_09400
03009 Ribosome biogenesis [BR:
xab03009
]
NUG21_09400
Enzymes [BR:
xab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NUG21_09400
Messenger RNA biogenesis [BR:
xab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NUG21_09400
Ribosome biogenesis [BR:
xab03009
]
Prokaryotic type
rRNA processing factors
NUG21_09400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
UYC13921
LinkDB
All DBs
Position
complement(2217145..2220693)
Genome browser
AA seq
1182 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GGERHGFLPLKEISRDYFQAGVDHNKATIRELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQVWKSIAEAALAKPAPFLIYQESRLIIRALRDYLRADIGEILVDTEEMYGDAK
EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LQNALKYDRARVQIGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRRALSEIEKRHDAPIVIVADEQLHTPH
YEVTRLRENELGEESTKPSYQRGTPRKLPVHALTKAQLNIPAPAVTNVKHSQPAPVREVV
EEPAAAPAPAPVVAPTPVAPPATGVVGWLKRIFGAGDSPAPAPAAAEPAQRQRPQDGNRN
RNDRGDRSDRNARRDGNRNGGQGGNAARGNGHNGGGNARRDERRAGNGNGAAAPAGQQNP
QPKAPRNEQATQQAKPQQPQTPKPPKQQQPQNPPRQPKPQQEPAQAAAQGDKPPRQPRAE
EAVAKQQAAPVATSPVTPVQDATTLAAAAVAGGAIATSQEPAAAVEATAAPAQSAPTAAA
SSIDERESAAETAQAVPAGEGAEGEDGTGDAGGRRRRGRRGGRRRRRGNGEAGAAGDAAG
LDDADLDAGDSDGESAQAPSRSQPEFDFDDDAAGDAPASKPQPPVQEKEKREPQEKREPR
RERAAAASSAPAPADDAAQAPAPIAVDPVPAPATAPMQPTAPADAVIAAPAPTAPAAATQ
GASDAAVAHADTVVAAAPAAPAAVAETTPPAQQTVGTERAAAPAERATPAAAPAAPQPQA
VTTAVEQPTATAAKAPVAEPDAADATATVEDPASVTAPAAAAAAPSAAPAVTAAPVEPRA
EEPAPAKPAYAPVQTTMLDAFADAPAKIPHGGEAAAAAPTEAASATPASSDTATSAATAS
TQVAAVDEAERKERAAAAAPQSAAHAPHAADKADGDEHKDRT
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgccacgcaggcagaagaactgcgtgtagccatcgtggac
ggccagaccctgtacgacatcgacatcgagcagccgtccaaggaacagaagaagtccaac
atctacaagggccgcatcacccggctcgaaccctcgctggaagcggccttcgtcgaatac
ggcggcgagcgccacggcttcctgccgctgaaggaaatctcccgcgattacttccaggcc
ggcgtcgaccacaacaaggcgacgatccgcgaactgctgcgcgagggccaggaagtggtg
gtgcaggtggacaaggaggagcgcggcaacaagggcgcggccctgaccacgttcatctcc
ttggccggccgctacatggtgctgatgccgaactcgcccagcgccggcggcgtctcgcgc
cggatcgagggcgaggaccgcgccgcgctgaaggaagcgctggacaagctgaacatcccc
gacgacatgggcgtgatcatccgcaccgccggcgtcggccgcgatgccgaagagctgcag
tgggacctggactacctgctgcaggtgtggaagtcgatcgccgaggccgccctggccaag
ccggcgccgttcctgatctaccaggaatcgcggctgatcatccgcgccctgcgcgactac
ctgcgtgccgacatcggcgagatcctggtcgacaccgaggagatgtacggcgacgccaag
gaattcatgcagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgac
atcccgctgttcaaccgcttccagatcgagtcgcagatcgaggccgcctacgagcgcagc
gtgcgcctgccctccggcggctcgatcgtggtcgaccagaccgaggcgctgaccgcggtg
gacgtcaactcctcgcgcgccaccaagggcagcgacatcgaggacaccgcgttccagacc
aacctggaggcggccgaagaggtcgcgcgccagttgcgcctgcgcgacctcggcggcctg
gtggtgatcgacttcatcgacatggcctccaacaagcaccagcgcgaagtcgagaaccgc
ctgcagaacgcgctcaagtacgaccgcgcgcgggtgcagatcggccgcatctcgcgcttc
ggcctgctggagatgagccgccagcgcctgcgcccgtcgctgggcgaatccagccagatc
gtctgcccgcgctgcgacggccacggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtcgccgaagagcatgcgatgaaagagaacaccgggcaggtgctggtgcag
gcgccggtggagatcgccaactacctgctcaacgagaagcgccgcgcgctcagcgagatc
gagaagcgccacgacgcgccgatcgtgatcgtcgccgacgagcagctgcacaccccgcac
tacgaagtgacccgcctgcgcgagaacgagttgggcgaggaaagcaccaagcccagctac
cagcgcggcaccccgcgcaagctgccggtgcatgcgctgaccaaggcgcagttgaacatt
ccggcgcctgcggtgaccaatgtgaagcactcgcagccggccccggtgcgcgaagtggtc
gaggaaccggccgccgcgccggcaccggccccggtcgtcgcgccgacgccggtcgcgccg
ccggccaccggcgtggtcggctggctgaagcgcatcttcggcgccggcgacagcccggcc
cccgccccggccgccgccgagccggcgcagcgtcagcgcccgcaggacggcaaccgcaac
cgcaacgaccgtggcgatcgcagcgaccgcaacgcgcgccgtgacggcaaccgcaacggc
ggccagggcggcaatgccgcccgcggcaacggccacaacggcggcggcaacgcacgccgc
gacgagcgccgcgccggcaacggcaatggcgccgccgcgccggccgggcagcagaacccg
cagcccaaggcgccgcgcaacgagcaggccacacagcaggccaagccgcagcagccgcag
acgcccaagccgccgaagcagcagcagccgcagaacccgccgcgccagcccaagccgcag
caggagccggcgcaggctgccgcgcagggcgacaagccgccgcgtcagccgcgcgccgag
gaagccgtcgccaagcagcaggccgcgcctgtcgcgaccagcccggtgacgccggtgcag
gacgccaccaccctggccgccgccgcggtcgccggtggcgcgatcgccacgtcccaggag
ccggcagcggccgtcgaggccaccgccgcgccggcgcaatcggcgccgaccgccgcagcg
agcagcatcgatgagcgcgaaagcgccgccgagaccgcccaggccgtgcctgccggcgaa
ggcgccgagggcgaggacggcaccggcgatgccggcggccgccgccgccgcggtcgtcgt
ggtggccgccgccgccgccgtggcaatggcgaagccggcgctgccggcgatgccgccggg
ctggacgatgccgacctggatgccggcgacagcgacggcgaaagcgcgcaggcgccgagc
cgcagccagccggagttcgacttcgacgacgacgctgccggcgacgcgcccgcgtccaag
ccgcagccgcccgtacaggagaaggagaagcgcgagccgcaggaaaagcgcgagccgcgc
cgcgagcgtgcagccgccgccagcagcgcaccggcaccggccgacgacgcagcccaggcc
cccgcgccgatcgccgtcgaccccgtgcctgcgccggccaccgcaccgatgcagccgacc
gcgccggccgacgccgtgatcgcagcgcctgcgccgaccgcgccggccgctgccacccag
ggcgccagcgatgccgccgtcgcccacgccgacacggtggtggctgccgcacctgcggca
ccggcagcggtcgccgagacgacgccgccagcgcagcagaccgtgggcaccgagcgcgcc
gcggcaccggccgaacgcgcaacaccggccgccgcaccggccgcgccgcagccgcaggcg
gtcaccactgccgtcgagcaaccgaccgcgaccgccgccaaggccccggtcgcggagccg
gacgccgcggatgccacggccacggtcgaggatccggcgagcgtgaccgcgccggcggca
gccgcagccgcgccgagcgcagcaccggccgtcaccgctgctcccgtggagccgcgcgcg
gaggaaccggcaccggccaagccagcctacgccccggtgcagaccacgatgctcgacgcc
ttcgccgatgcaccggcgaagatcccgcacggtggcgaagcagcggccgccgcgccgacc
gaggccgcatcggccacgccggcaagcagtgacaccgcaacgtccgccgccactgcctcg
acgcaggtcgcggctgtcgacgaagcggagaggaaggaacgtgctgccgccgccgcgccg
cagtccgcagcgcatgcgccgcatgccgcggacaaggcggacggcgacgagcacaaggat
cgcacctga
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