Xanthomonas citri pv. citri 306: XAC0965
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Entry
XAC0965 CDS
T00084
Symbol
rpoB
Name
(GenBank) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
xac
Xanthomonas citri pv. citri 306
Pathway
xac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XAC0965 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xac03021
]
XAC0965 (rpoB)
03400 DNA repair and recombination proteins [BR:
xac03400
]
XAC0965 (rpoB)
Enzymes [BR:
xac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XAC0965 (rpoB)
Transcription machinery [BR:
xac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XAC0965 (rpoB)
DNA repair and recombination proteins [BR:
xac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XAC0965 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AAM35848
UniProt:
Q8PNT0
LinkDB
All DBs
Position
1121568..1125719
Genome browser
AA seq
1383 aa
AA seq
DB search
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPNKRKDLGLHAALKS
VFPISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTGNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD
EGVQLELVPERLRGETLNFDLADGDKVIVEAGKRITARHVKQLEAAGVAALAVPDDYLVG
RILSHDVVDGSTGELLANANDEINEDQLAAFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGRKDV
LGESVLYDKKYFAERNDEESKRLVAEHADTSDILEVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLTEQ
FVPCRFQGESLLKPPSEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPT
LRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEAEIGGGTDAGVDIY
NLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGGANLK
KGDTVTDAYLDGLKKSDWFQLRMKDEDAADAIERAQKQIQAHEKEFEARFADKRGKITQG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGESVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGRKIQRMLEAQAAVSELRKFLNDIYNHDNAINAQR
VDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELADLPQSGQTQLYDGRTG
EAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINME
LEE
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcttattcgttcaccgaaaaaaagcgtatccgcaaggacttcggtaagcagcgc
tcgatcctcgaagtgccgttcctgcttgccatccaggtggattcctatcgcgaattcctg
caggaagacgtggagccgaacaagcgtaaggacctcggtctgcacgcggcattgaagtcg
gtgttcccgatttccagctacagcggcaacgctgcgctggagtacgtcggttacaagttg
ggtcagccggtgtttgacgagcgtgaatgccgtcagcgcggcatgagctatggcgcgccg
ctgcgcgtgaccgtgcgtctggtgatctacgaccgcgagtcgtcgaccaaggcgatcaag
tacgtgaaggagcaggaggtctatctcggcgaaattccgctgatgaccggcaacggtacc
ttcatcgtcaacggcaccgagcgcgtgatcgtctcgcagctgcaccgctcgccgggcgtg
ttcttcgatcacgaccgtggcaagacccacagctcgggcaagctgctctacagcgcccgc
atcattccgtaccgcggctcgtggttggacttcgagttcgacccgaaggatgcgctgttc
acccgtatcgaccgtcgccgcaagctgccggtgtcgatcctgctgcgtgcgcttggctac
agcaacgaagagatgctggccgagttcttcgagatcaacaccttccacatcaacccggac
gaaggcgtgcagctggagctggtgccggagcgtctgcgtggtgaaacgctgaacttcgac
ctggcagacggcgacaaggtcatcgtggaagcgggcaagcgcatcactgcgcgtcacgtc
aagcaactggaagccgccggcgttgccgcgctggccgtgccggacgactacctggtcggt
cgtatcctgtcgcacgacgtggtcgatggctccaccggcgaactgctggccaatgccaac
gacgaaatcaacgaagaccagctggctgccttccgcaaggcgggcgtcgatgcggtcggc
accctgtgggtgaacgatctggatcgtggtccgtacctgtccaacaccttgcgcatcgat
ccgaccaagacgcagctggaagcgctggtcgaaatctaccgcatgatgcgtccgggcgag
ccgccgaccaaggaagcggcgcagaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtccacggtcggccgcatgaagttcaaccgtcgcgtcggccgcaaggacgtg
ctgggcgagtcggtgctttacgacaagaagtactttgccgagcgtaacgacgaagaatcc
aagcgcctggttgccgagcacgccgacacttccgacatcctggaagtgatcaaggtgctc
accgaaatccgcaacggtcgcggcgtggtcgatgacatcgatcacctgggcaaccgtcgc
gtgcgttcggtcggcgaaatggccgagaacgtgttccgcgtgggcctggtccgcgtcgag
cgcgcggtcaaggagcgtctgtcgatggccgagtccgaaggcctgaccccgcaggagctg
atcaacgccaaaccggtggctgccgcgatcaaggaattcttcggctcctcgcagctgtcg
cagttcatggaccagaacaacccgctgtcggaagtgacgcacaagcgtcgcgtctccgcg
ctgggtccaggcggtctgacccgcgaacgcgccggcttcgaagtgcgcgacgtgcacccg
acccattacggccgcgtctgcaccatcgaaacgccggaaggcccgaacatcggcctgatc
aactcgctggccgtgttcgcccgcaccaaccagtacggcttcctcgagacgccgtaccgt
aaggtgctggacggcaaggtctccgacgacgtcgaatacctgtcggcgatcgaggaaaac
gagtacgtgatcgcccaggcgaacgcgctgaccgatgccaagaacatgctcaccgagcag
ttcgtgccgtgccggttccagggcgaatcgctgttgaagccgccgtccgaagtgcacttc
atggacgtctcgccgatgcagaccgtgtcggtcgcagcggcgctggtgccgttcctcgag
cacgacgacgccaaccgcgcactgatgggcgccaacatgcagcgccaggccgtgccgaca
ctgcgttcgcagaagccgctggtcggtaccggcatcgagcgtgcggttgcgcgcgactcg
ggcgtgaccgtcaatgcgctgcgtggtggcgtgatcgagcagatcgacgcagcccgcatc
gtggtcaaggtcaacgaggcagaaatcggcggcggcaccgatgccggcgtggatatctac
aacctgatcaagtacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtg
aatgtgggcgacgtgatcgcgcgcggcgacgtgctggcagacggcccgtccaccgacatc
ggcgaactggcgctgggccagaacatgctgatcgcgttcatgccgtggaacggctacaac
ttcgaagactccatcctgctctccgagcgcgtggtggaagaggatcgttacaccacgatc
cacatcgaagagctgacctgcgttgcgcgcgacaccaaattggggccggaggaaatttcc
gccgacatcccgaacgtgtccgagcaggccttgaaccgtctggatgaaagcggcgtggtg
tacatcggtgcggaagtgcgcgccggcgacatcatggtcggcaaggtcacgccgaagggc
gaaagccagctgactccggaagaaaagctgctgcgtgcgatcttcggcgagaaggcgtcc
gacgtgaaggacagctcgctgcgcgtgcccccgggcatggacggcaccgtcatcgacgtg
caggtcttcacccgcgacggcatcgagaaggacaagcgtgcgcgtcagatcgaagagtct
gaaatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctggaagcggccatc
tacgcgcgtctgcgctcgcagatcgtgggtaaggtcgccaacggcggcgccaacctgaag
aagggcgacaccgtcaccgacgcgtacctggacgggctgaagaagtccgattggttccag
ctgcgcatgaaggacgaagacgctgccgacgccatcgagcgtgcgcagaagcagatccag
gcgcacgagaaggaattcgaagcacgttttgccgacaagcgcggcaagatcacccagggc
gacgacctcgcaccgggcgtgctgaagatggtcaaggtgttcctggccgtgaagcgccgc
atccagccgggcgacaagatggcgggccgccacggcaacaagggtgtggtctccaacgtg
gtgcccgtggaagacatgccgtacatggccaccggcgagtcggtcgacatcgtgttgaac
ccgctcggcgtgccgtcgcgcatgaacatcggccagattctggaagtgcatctgggttgg
gccgccaagggcctgggtcgcaagatccagcgcatgctggaagcccaggccgccgtcagc
gaactgcgcaagttcctcaacgacatctacaaccacgacaacgcgatcaatgcacagcgc
gtggacctgtcgcagttcagcgatgaggaattgctcaacctgggcaagaacctgatcgac
ggcgtgccgatggcgaccccggtgttcgacggcgccagcgaagcggaaatcaagcgcatg
ctggagctggccgatctgccgcagagcggtcagacccagctgtacgacggtcgcactggc
gaagcgttcgatcgcaagaccacggtcggctacatgcattacctgaagttgaaccacttg
gtcgacgacaagatgcatgcgcgctcgactggcccgtactcgctggtgacccagcagccg
ctgggcggcaaggcgcagttcggtggtcagcgcttcggcgaaatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgacgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgatggtgagcacgagatggtcgcgggc
atgccggaatccttcaacgtgttggtgaaggaaatccgctcgctggcgatcaacatggaa
ctggaagagtaa
DBGET
integrated database retrieval system
