Xanthomonas citri subsp. citri 306: XAC3788
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Entry
XAC3788 CDS
T00084
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
xac
Xanthomonas citri subsp. citri 306
Pathway
xac02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xac00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
XAC3788 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xac03021
]
XAC3788 (rpoD)
Transcription machinery [BR:
xac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
XAC3788 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AAM38630
UniProt:
Q8PG33
LinkDB
All DBs
Position
complement(4456172..4458049)
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AA seq
625 aa
AA seq
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MANERPAQQSDIKLLISKGLEQGYLTYAEVNDHLPDDLVDPEQIEDIISMINGMGIDVHE
VAPDAETLLLNDGNTGNREVDDTAAEEAAAALTALDTEGGRTTDPVRMYMREMGTVELLT
REGEIAIAKRIEEGLSQVQAALGVFPLSTEMLLADYEAHKEGKKRLAEIVVGFNDLIEEA
DAAAAALAAAGPVAVSDDEAVDEDDDEDGDDEAAEEEAGPTGPDPVEVATRMENLANEYA
KFKKVYAKNGAEHKLVVKAREDMAAIFTTLKLPLPLTDALVTQLRGVVNGIKDHERKVLH
LATTVARMPRKDFIRSWEGNQTNLEWVEDALKRKQKWSSALRDVKDQIISEQQGSIEMEK
ANYLTLGEIKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ
MLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVE
SPIDNTTNINLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQ
IEAKALRKLRHPSRSEQLRSFLDID
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgaacgtcctgcccagcaatccgacatcaagctactgatcagcaagggcctg
gaacagggctatctgacctacgccgaagtcaatgaccatctgcccgacgacctcgtcgac
ccggagcagatcgaagacatcatcagcatgatcaacggcatgggcatcgatgtccatgaa
gttgcacccgatgccgaaaccctgttgctcaacgatggcaacaccggcaaccgcgaggtt
gacgacaccgcagccgaagaagctgccgccgcgctgaccgcgctcgacaccgaaggtggc
cgcaccaccgacccggtgcgcatgtacatgcgcgaaatgggcacggtcgagctgctgacc
cgcgaaggcgaaatcgccatcgccaagcgcatcgaagaaggcctgagccaggtccaggcc
gcgttgggcgtgttcccgctctcgaccgaaatgctgctggccgactacgaagcgcacaag
gagggcaagaagcgtctggccgagatcgtggtcggcttcaacgacctgatcgaagaggcc
gatgcggccgctgctgcgctcgccgcggccggtccggtcgccgtgtccgacgatgaagca
gtcgacgaagacgacgacgaagacggcgatgacgaggccgccgaagaagaggccggcccg
accggtccggacccggtggaagtggccacgcgcatggagaacctggctaacgaatacgcc
aagttcaagaaggtctatgccaagaacggcgccgagcacaagctggtggtcaaggcgcgc
gaagacatggccgccatcttcaccacgctcaagctgccgctgccgctgaccgacgcgctg
gtcacccagctgcgtggcgtggtcaatggcatcaaggaccacgagcgcaaggtgctgcac
ctggccaccaccgtggcccgcatgccgcgcaaggatttcatccgctcctgggaaggcaac
cagaccaacctggaatgggtggaggacgcactcaagcgcaagcagaagtggtcctcggcg
ctgcgcgacgtcaaggatcagatcatctccgagcagcagggctcgatcgagatggaaaag
gccaattacctgaccctgggcgagatcaaggaaatcagccgtgcgatggcctatggcgaa
gccaaggcgcgcaaggctaagaaggaaatggtcgaagccaacctgcgtctggtgatctcc
atcgccaagaagtacaccaaccgcggcctgcagttcctggatctgatccaggaaggcaac
atcggcctgatgaaggccgtggacaagttcgaataccgtcgcggttacaagttctcgacg
tatgccacgtggtggatccgtcaggccatcacccgttcgatcgccgatcaggcgcgcacc
atccgtatcccggtgcacatgatcgaaacgatcaacaagttgaaccgcatttcccgccag
atgctccagcagttcggtcgcgaggccacgccggaggaactggccaaggaaatggacatg
cccgaggacaagatccgcaaggtgatgaaaatcgccaaggagccgatctcgatggaaacc
ccgatcggcgacgacgaggattcgcatctgggcgacttcatcgaggacaccaatgtggag
tccccgatcgacaacaccaccaacatcaatctctccgagacggtgcgtgacgtgttggcc
ggcctcaccccgcgcgaggcgaaggtactgcgcatgcgcttcggtatcgacatgaacacc
gatcacacgctggaagaggtcggtaagcagttcgacgtcacccgtgagcggattcgtcag
atagaggccaaggcattgcgcaagctgcgtcacccgagccgttcggaacagctgcgctcg
ttcctggatatcgactga
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