Xanthomonas sp. CFBP 8443: NUG20_13980
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Entry
NUG20_13980 CDS
T11514
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xaf Xanthomonas sp. CFBP 8443
Pathway
xaf03030
DNA replication
xaf03430
Mismatch repair
xaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NUG20_13980 (dnaE)
03430 Mismatch repair
NUG20_13980 (dnaE)
03440 Homologous recombination
NUG20_13980 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xaf03032
]
NUG20_13980 (dnaE)
03400 DNA repair and recombination proteins [BR:
xaf03400
]
NUG20_13980 (dnaE)
Enzymes [BR:
xaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NUG20_13980 (dnaE)
DNA replication proteins [BR:
xaf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NUG20_13980 (dnaE)
DNA repair and recombination proteins [BR:
xaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NUG20_13980 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UYC19283
LinkDB
All DBs
Position
3341103..3344696
Genome browser
AA seq
1197 aa
AA seq
DB search
MSTSRFAHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELELPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADLLISDGTQAPWRLTVLCRNRDGYLSLSRLLTRAWLEG
HRNEGGVALRPEWLQTGSDNLFALAGRDSLAGRLASEGRHDLAEQQLADWQRIFGDGLHL
ELTRTGRDGEEAFNQFALHAAGMRGLPVVASNDVRFLYASDFAAHEARVCISSGRVLDDP
KRPRDYSDQQYLKSSEEMAALFADIPDAIDNTLALAQRCNIEMQLGTYFLPAYPVPDNET
LDSWIRSQSREGLAARLEKNPLAPGKTRQDYVDRLEFELDTIIKMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRDRVSQIITYGTMAAKAVVRDCGRVLGFPYGLVDGVAKLIPNILGIT
LKDAMGEGKDSEMASPELIQRYQSEDDVRDLMDLARQLEDLTRNAGKHAGGVVIAPTPLS
DFCPLFAEHDVDNLGKNPVTQFDKDDVEQVGLVKFDFLGLRTLTIIDWAVKAINVRHARA
GIPPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLLKDAKPDRFEDLIALVSLY
RPGPMDLIPDFNARKHGQQEIIYPDPRTEAILKDTYGIMVYQEQVMQMAQIVGAYSLGGA
DLLRRAMGKKVPAEMAKHREIFREGAAKGGVGQAKADEIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLGLTVLPPRINASAYMFAA
ATPDTIQYGLGAIKGVGRGACEAIVAERERGGEYASLLDFCTRVESAKLNKRTLEALINA
GAMDGLGSNRATLMLQLPEVMKATEQMARERASGQNSLFGGADTSAPALRLELPESKEWA
LGQLLTGERETLGFYLSGHPFDPYREEVRDLVGCDLSALEKICSQSGGGRGGGGGDGEKR
AWRPEISAILAGQVVGVRRKGDSQVFVQLEDGRGRVECSAFTDAIAEFGHLLTRDRILIV
KGGVREDEFNGGYAMRIRQCWDYEQICTHHAQRLSLRLDLRQRSTWPRIDALLARHRPGK
TPLRLDLLLASEQGSVAGMLDLNGSHSVRVDPQLLDTLRADPGVRAVKVKYNPPWAT
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgtccacttcccgcttcgcccatctgcacgtccacaccgaattctcgctggcggattcc
accatccgtgtgcccgagaaaccggatcaggccgacccgaagaaagccaagcaggccaac
ctgctcagccgcgcggtcgaactggagttgcccgcgctcgcggtcaccgacctcaacaac
ctgttcgcgctggtcaagttctacaaggccgccgaaggcgtgggcatcaagccgatcgcc
ggcgccgacctgctgatcagcgacggcacccaggcgccgtggcggctcaccgtgctgtgc
cgcaaccgcgacggctacctgagcctgtcgcggctgctgacccgcgcctggctggaaggc
caccgcaacgaaggcggcgtggcgctgcgcccggaatggctgcagaccggcagcgacaac
ctgttcgcgctggccgggcgcgacagcctggccggacgcctggccagcgaaggccgccac
gacctggccgagcagcagctggccgactggcagcgcatcttcggcgacggcctgcacttg
gaactgacccgcaccggccgcgacggcgaggaagcgttcaaccagttcgcgctgcacgcg
gccggcatgcgcgggctgccggtggtggccagcaacgacgtgcgcttcctgtacgccagc
gatttcgccgcgcacgaggcgcgcgtgtgcatttcctccggccgcgtgctcgatgacccc
aagcgcccgcgcgactacagcgaccagcaatacctgaagtcgtccgaggaaatggccgcg
ctgttcgccgacatccccgacgcgatcgacaacacgctggcgctggcgcagcgctgcaac
atcgagatgcagttgggcacctacttcctgcccgcgtatcccgtgcccgacaacgagacg
ctggacagctggatccgcagccagtcgcgcgagggcctggccgcgcgcctggagaagaac
ccgctggcgccgggcaagacccgccaggactacgtcgaccggctcgaattcgagctggac
accatcatcaagatgggcttccccggctacttcctgatcgtggccgacttcatccagtgg
ggcaagaaccagggcatcccgatcggccccggccgcggctccggcgccggctcgctggtg
gcctgggcgctgcagatcaccgatctggatccgctgccgtacaacctgctgttcgagcgc
ttcctcaatcccgaacgcgtgtcgatgcccgacttcgacatcgacttctgcatggaccgt
cgcgacgaggtcatcgactacgtcgcgcgcaagtacgggcgcgaccgggtcagccagatc
atcacctacggcaccatggcggccaaggcggtggtgcgcgactgcggccgcgtgctcggc
ttcccgtacggcctggtcgacggcgtcgccaagctgatccccaacatcctcggcatcacg
ctgaaggatgcgatgggcgaaggcaaggacagcgagatggcctcgccggagctgatccag
cgctaccagagcgaggacgacgtccgcgacctgatggacctggcgcggcagctggaggac
ctgacccgcaacgccggcaagcacgccggcggcgtggtgatcgcgccgacgccgctgtcc
gacttctgcccgctgttcgccgaacacgacgtcgacaacctgggcaagaacccggtcacc
cagttcgacaaggacgacgtcgagcaggtcggcctggtcaagttcgacttcctcggcctg
cgcacgctgaccatcatcgactgggcggtgaaggcgatcaacgtgcggcatgcgcgcgcc
ggcatcccgccggtggacatcaccgcgatcccgctcgacgacgcgcccacctacaagggc
gtgttcgcctcgggcaacaccggcgccgtgttccagttcgaatcctcgggcatgcgccgg
ctgctgaaggacgccaagcccgaccgcttcgaagacctaatcgcgctggtgtcgctgtac
cgtccgggcccgatggacctgatcccggacttcaacgcgcgcaagcacggccagcaggag
atcatctaccccgatccgcgcaccgaagcgatcctgaaagacacctacggcatcatggtg
taccaggagcaggtgatgcagatggcgcagatcgtcggcgcctactcgctgggcggcgcc
gacctgctgcgccgcgcgatgggcaagaaggtgccggcggagatggccaagcaccgcgag
atcttccgcgagggcgcggccaagggcggcgtcggccaggccaaggccgacgaaatcttc
gacctgatggagaagttcgccggctacggcttcaacaagtcgcacgccgccgcctacgcg
ctggtcagctaccagaccgcctggctgaaacggcactacccggccgagttcatggccgcg
acgctgtcctcggacatggacaacaccgacaaggtggtgggcttcctcgacgaggtgcgc
aacctcggcctgaccgtgctgccgccgcggatcaacgcctcggcgtacatgttcgccgcg
gccacgccggacaccatccagtacggcctgggcgcgatcaagggcgtgggccgcggcgcc
tgcgaggcgatcgtggccgagcgcgagcgtggcggcgaatatgcctcgctgctggatttc
tgcacgcgcgtggaatcggccaaactcaacaagcgcaccctggaagcgttgatcaacgcc
ggcgcgatggacgggctgggcagcaaccgcgccacgctgatgctgcagctgccggaagtg
atgaaggccaccgagcagatggcgcgcgagcgcgcctccgggcagaactcgctgttcggc
ggcgccgacaccagcgcgccggcgctgcgcctggagctgccggaaagcaaggaatgggcg
ctgggccaattgctgaccggcgaacgcgagacgctgggcttctatctcagcggccatccg
ttcgatccgtaccgcgaggaagtgcgcgacctggtcggctgcgacctgagcgcgctggag
aagatctgttcgcaatccggcggcggccgcggtggcggcggtggcgacggcgagaaacgc
gcctggcgcccggagatcagcgcgatcctggccggccaggtggtcggcgtgcgccgcaag
ggcgacagccaggtgttcgtgcagctcgaagacggccgcggccgggtcgagtgcagcgcg
ttcaccgatgccatcgccgagttcggccacctgctcacccgcgaccgcatcctgatcgtc
aagggcggcgtgcgcgaggacgaattcaatggcggctatgccatgcgcatccgccagtgc
tgggactacgaacagatctgcacccaccacgcgcaacgcctgtcgctgcgcctggacctg
cgccagcgcagcacctggccgcgcatcgacgcactgctggcgcgccaccgccccggcaag
acgccgctgcgcctggacctgctgctggcctcggaacagggcagcgtggccggcatgctc
gacctcaacggcagccactccgtgcgcgtggatccgcagttgctggacaccctgcgcgcc
gatcccggcgtgcgtgcggtcaaggtcaagtacaacccgccctgggcgacgtga
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