Xanthomonas sp. GW: HEP73_00321
Help
Entry
HEP73_00321 CDS
T08755
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xag
Xanthomonas sp. GW
Brite
KEGG Orthology (KO) [BR:
xag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xag03016
]
HEP73_00321
Enzymes [BR:
xag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HEP73_00321
Transfer RNA biogenesis [BR:
xag03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HEP73_00321
Prokaryotic type
tRNA splicing ligases
HEP73_00321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Gam
Motif
Other DBs
NCBI-ProteinID:
QNH19431
LinkDB
All DBs
Position
complement(359074..360294)
Genome browser
AA seq
406 aa
AA seq
DB search
MNMQNYELLHAEGSATPIKGWVRGVPLEAQAHEQLRNIAAIPFVGPWVAVMPDVHLGKGA
TVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRAADLPDSLAQLRSSIERSVPVGNGRGG
EHRKLPDSIATRIAQSGLVERLDTIKARHRRIRTDKLDCQIGTLGGGNHFIEVCLDESDA
VWVMLHSGSRGTGNLIGSYFIEQAREQLAHRVLGFHLPDKDLAFFMEGEPLFDDYVEAVS
WAQDYARENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHAGEELLVTRKGAV
SARAGELGIIPGSMGAKSFIVRGLGNGDSFHSCSHGAGRLLSRTAARQQITLAQHREATA
HVECRKDAAVIDESPAAYKSIDAVMAAQSDLVEVVHTLRQVLCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaacatgcagaactatgaattgctgcacgccgagggcagcgccacgccgatcaagggc
tgggtgcgcggcgtgccgctggaagcgcaggcccacgagcaactgcgcaacatcgccgcg
atcccgttcgtgggaccatgggtggcggtgatgccggacgtgcacctgggcaagggcgcg
accgtgggctcggtgatcccgacccgcggcgcgatcatcccggccgcggtcggcgtggac
atcggctgcggcatggccgcggtgcggaccacgctgcgcgcggccgatctgcccgacagc
ctggcgcaactgcgctccagcatcgagcgcagcgtgccggtcggcaatggccgcggcggc
gagcaccgcaagctgcccgacagcatcgccacgcgcatcgcgcagtcggggctggtcgag
cgcctggacacgatcaaggccaggcaccgccggatccgcaccgacaagctggactgccag
atcggcacgctcggcggcggcaaccacttcatcgaagtgtgcctggacgagagcgacgcg
gtgtgggtgatgctgcacagcggctcgcgcggcaccggcaacctgatcggcagctacttc
atcgagcaggcgcgcgagcagttggcgcaccgcgtgctcggcttccacctgccggacaag
gacctggcgttcttcatggaaggcgagccgttgttcgacgactacgtggaagcggtgtcc
tgggcgcaggactacgcccgcgagaaccgcgaggcgatgatggcgcgggtgctggcggag
atgcgccaccgcttgccgaagttccagttggagaagctggcggtgaactgccatcacaac
tacgtgcagaaggaaacgcacgccggcgaggaactgttggtgacgcgcaagggcgcggtc
agcgcgcgtgccggcgagctgggcatcatccccggcagcatgggcgcgaagagcttcatc
gtgcgcggcctgggcaatggcgacagcttccacagctgcagccacggcgccgggcggttg
ctgagccggaccgccgcgcgccagcagatcaccctggcccagcaccgcgaggccaccgcg
cacgtggagtgccgcaaggatgcggcggtgatcgacgaatcgccggcggcttacaagtcg
atcgacgcggtgatggccgcgcaaagcgacctggtggaagtggtgcatacgctgcgtcag
gtgttgtgcgttaagggctga
DBGET
integrated database retrieval system
