Xanthomonas sp. GW: HEP73_00560
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Entry
HEP73_00560 CDS
T08755
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
xag
Xanthomonas sp. GW
Pathway
xag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP73_00560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xag03021
]
HEP73_00560
03019 Messenger RNA biogenesis [BR:
xag03019
]
HEP73_00560
Transcription machinery [BR:
xag03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HEP73_00560
Messenger RNA biogenesis [BR:
xag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HEP73_00560
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
Spore_III_AA
OB_RNB
AAA_22
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QNH19663
LinkDB
All DBs
Position
complement(651495..653333)
Genome browser
AA seq
612 aa
AA seq
DB search
MSDNTTTEPGSVDAPAEKRARKPRVSKAVAGADGGAEHGAPAQPNLPLNQAPAQSDAPRP
APQERQERQERAAPQEHAQAPSQQPQSQPAPASGGDAQGQGGGNQNDGGEPREGGNPRFN
NQNPQNQNNQNNQQGNRRDRFRNRRDRDRGGGGGGGGGGGGGRFPDNGLPNDTGANEVFV
PRPHANVPEGFPIYSLSDLKRMPAQKLLDIAEQLNIQDGVARARKQDVIFALLKVLTRHG
EGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKD
GERYFALSIVDTINGEPLEASKNKVLFENLTALFPRKRFTLERGNGSSEDISGRILDLMA
PQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPDVHMIVLLIDERPEEVTEMQRTVRGE
VISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSGKVLS
GGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSEVHLN
RRIAEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPMDEIAAMEFLLDKMKNT
KSNDEFFGSMKR
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgataacaccaccaccgaacccgggagcgtcgacgcccccgccgagaagcgcgcg
cgcaagccacgtgtcagcaaggccgtcgccggcgctgacggcggagccgagcacggcgca
ccggcgcagccgaacctgccgctgaaccaggcgccggcccagtccgacgcgccgcgtccg
gcgccgcaagaacgccaggaacgccaggagcgcgccgcgccgcaggaacacgcgcaggcc
ccgtcgcagcagccccagtcccagcccgctcccgcctccggcggcgatgcccagggccag
ggcggcggcaaccagaacgacggcggcgagccgcgcgaaggcggcaacccgcgcttcaac
aaccagaatccgcagaaccagaacaaccagaacaaccagcagggcaatcgtcgcgaccgc
ttccgcaatcgccgcgatcgcgatcgtggcggcggtggaggcggtggtggtggcggcggc
ggcggtcgcttcccggacaacggcctgcccaacgacaccggcgccaacgaagtgttcgtg
ccgcgcccgcacgccaacgtgccggaaggtttcccgatctactcgctgagcgacctgaag
cggatgccggcgcagaagctgctggacatcgccgagcagctcaacatccaggacggcgtg
gcccgcgcgcgcaagcaggacgtgatcttcgcgctgctgaaggtgctgacccgccacggc
gaaggcgtcgccgccgacggcgtgctggaaatcctgccggacggcttcggcttcctgcgc
gcggccgaggccagctacctggccggcccggacgacacctacatctcgcccagccagatc
cgccgcttcaacctgcgcaccggtgaccacctgtccggccgcatccgcttcccgaaggac
ggcgaacgctacttcgcgctgtcgatcgtcgacacgatcaacggcgagccgctggaagcg
agcaagaacaaggtgctgttcgagaacctgaccgcgctgttcccgcgcaagcgcttcacc
ctggaacgcggcaacggttcctcggaagacatctccgggcgcatcctcgatctgatggcg
ccgcagggcaagggccagcgcgctctgatcgtgtccccgcccaaggccggcaagaccatg
ctgatgcagcaggtggccacggcgatcaccaccaaccatcccgacgtgcacatgatcgtg
ctgctgatcgacgagcggccggaagaagtgaccgaaatgcagcgcaccgtgcgcggcgag
gtcatctcctccaccttcgacgagccggccgcgcgccacgtgcaggtcgccgagatggtg
atcgagcgcgccaagcgcctggtcgagcacaagaaggacgtggtgatcctgctcgactcg
atcacccgcctggcccgcgcctacaacaacgtggtgccgtcctccggcaaggtgctcagc
ggcggcgtcgacgccaatgcgctgcaccgcccgaagcgtttcttcggcgcggcgcgcaac
gtcgaggaaggcggttcgctgaccatcatcgccacggcgctggtggaaaccggcagcaag
atggacgaggtgatctacgaagagttcaagggcaccggcaacagcgaagtgcacctgaac
cgccgtatcgccgagaagcgcgtgtacccggcgatcgacatcaaccgttccggcacccgc
cgcgaagacctgctgatcgagccggagctgctgcagaagatctggatcctgcgcaagctg
ctgcatccgatggacgagatcgcggcgatggagttcctgctggacaagatgaagaacacc
aagtccaacgacgagttcttcggttcgatgaagcgctga
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