Xanthomonas sp. GW: HEP73_00600
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Entry
HEP73_00600 CDS
T08755
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
xag
Xanthomonas sp. GW
Pathway
xag02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xag00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HEP73_00600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xag03021
]
HEP73_00600
Transcription machinery [BR:
xag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HEP73_00600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QNH19703
LinkDB
All DBs
Position
697963..699822
Genome browser
AA seq
619 aa
AA seq
DB search
MANERPAQQSDIKLLISKGLEQGYLTYAEVNDHLPDDLVDPEQIEDIISMINGMGIDVHE
VAPDAETLLLNDGNTGNREVDDTAAEEAAAALTALDTEGGRTTDPVRMYMREMGTVELLT
REGEIAIAKRIEEGLSQVQAALGAFPLAVETLLEDYEQHKEGKKRLAEIVVGFNDLIEEE
PAPPAVVASDDDAADADADDDDEEVEAAEEEAGPTGPDPAEVARRMEVLATEYAKFKKAH
AKNGAEHKLVTKLRTDIAEVFVTLKLPLPLTDVLVRKLRDTMAQVKDHERRVLHLATHVA
RMPRKDFIRSWEGNQTNVAWVDDALKRKQKWSSALRDVKDQIVAEQEATVAVEQATYLSL
TELKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQYG
REATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIENT
TNINLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL
RKLRHPSRSEQLRSFLDID
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgaacgtcctgcccagcaatccgacatcaagctactgatcagcaagggcctg
gaacagggctatctgacctacgccgaagtcaatgaccatctgcccgacgacttggtcgat
ccggagcagatcgaagacatcatcagcatgatcaacggcatgggcatcgacgtccatgaa
gtcgcccccgacgccgagaccctgctgctcaacgacggcaacaccggtaaccgcgaagtc
gacgacaccgcggccgaagaagccgccgcggcgctgaccgcgctcgacaccgaaggtggc
cgtaccaccgacccggtgcgcatgtacatgcgcgagatgggcacggtcgagctgctgacc
cgcgaaggcgaaatcgccatcgccaagcgcatcgaggaaggcctcagccaggtccaggcc
gcgctgggcgcgttcccgctggcggtggagacgctgctcgaggactacgaacagcacaag
gaaggcaagaagcgcctggccgagatcgtggtcggcttcaacgacctgatcgaggaagag
ccggcgccgccggcggtggtcgccagcgacgacgatgccgccgatgccgatgccgacgac
gacgacgaggaagtcgaagccgccgaggaagaggccggcccgaccggtccggatccggcc
gaggtcgcgcggcgcatggaggtgctggccaccgaatacgccaagttcaagaaggcgcac
gccaagaacggcgccgagcacaagctggtcaccaagctgcgcaccgacatcgccgaggtg
ttcgtcaccctgaagctgccgctgccgctgaccgacgtgctggtgcgcaagctgcgcgac
accatggcccaggtcaaggaccacgagcgtcgcgtgctgcacctggccacgcacgtggcg
cggatgccgcgcaaggatttcatccgttcctgggaaggcaaccagaccaacgtggcctgg
gtcgacgacgcactgaagcgcaagcagaagtggtcctcggcgctgcgcgacgtcaaggac
cagatcgtcgccgagcaggaagccaccgtggcggtggagcaggcgacctacctgagcctg
accgagctgaaggaaatcagccgcgcgatggcctatggcgaagccaaggcgcgcaaggcc
aagaaggaaatggtcgaggccaacctgcgcctggtgatctcgatcgccaagaagtacacc
aaccgcggcctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcg
gtggacaagttcgaataccgtcgcggctacaagttctccacgtatgcgacctggtggatc
cgccaggccatcacccgttcgatcgccgatcaggcgcgcaccatccgtatcccggtgcac
atgatcgagacgatcaacaagttgaaccgcatttcccggcagatgctccagcagtacggc
cgcgaggccacgccggaggagctggccaaggaaatggacatgccggaggacaagatccgc
aaggtgatgaagatcgccaaggagccgatctcgatggaaaccccgatcggcgacgacgag
gattcgcatctgggcgacttcatcgaggacaccaacgtggagtccccgatcgagaacacc
accaacatcaacctgtccgagaccgtgcgcgacgtgctcgccgggctgaccccgcgcgag
gccaaggtgctgcgcatgcgcttcggcatcgacatgaacaccgaccacaccctcgaggaa
gtcggcaagcagttcgatgtcacccgcgagcgcatccgccagatagaggccaaggcgttg
cgcaagctgcgtcatccgagccgctccgagcagctgcgcagcttcctcgacatcgactga
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