Xanthomonas sp. GW: HEP73_01470
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Entry
HEP73_01470 CDS
T08755
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xag
Xanthomonas sp. GW
Pathway
xag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HEP73_01470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xag03400
]
HEP73_01470
Enzymes [BR:
xag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HEP73_01470
DNA repair and recombination proteins [BR:
xag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HEP73_01470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
LcrG
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QNH20570
UniProt:
A0A7G7SV00
LinkDB
All DBs
Position
complement(1777239..1780928)
Genome browser
AA seq
1229 aa
AA seq
DB search
MAPLSFPVPPLPKSGQLRAFWRAPASSTALAWHIACAAAAHRGPLLVVARDNQSAHQIEA
DLHTLLAGDGSLPVVPFPDWETLPYDQFSPHPDIVSQRLSALHRLPTLKQGIVVVPVQTL
MQRVAPLRYIVGGSFDLHVGQRLDLEAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVYP
MGSDTPLRIELLDEDIDSIRAFDPESQRSLDHVQAVKMLPGREVPMDDASVERVLATLRE
RFDVDTRRSALYQDLKARLAPSGIEYYLPLFFQETRGAGAAARDATATLFDYLGESVLPL
LAPGVGAAADAFWAQTQNRYEQRRHDVERPLLAPEELYQAPDTLREKLNGLPRIEVWAAD
HARIDEAQALGDQPLPPLPVAAKDAAPAEALKSFLGSYPGRVLIAADSPGRREALLEVLA
AAGLKPEVIPNFAAFLPPPPGRRWREAPDEGAALAPSSSKKATASSASLTAAQKQVASGR
TLTPTPLPGGEGLGGSGGLDAAPAAFAIAVAPLDDGFALDDPHIAVLTERQLFPERAGQP
RRTRRAGREPEAIIRDLGELTEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGD
RLYVPVAQLHLISRYSGASAETAPLHSLGGEQWTKAKRRAAEKVRDVAAELLEIQARRRA
RAGLALQVDRAMYEPFAAGFPFEETTDQLAAIEATLRDLGSSQPMDRVVCGDVGFGKTEV
AVRAAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADWPLRVEVLSRFKSAKEIKAELE
KVADGGIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKALRANVHLLTLTAT
PIPRTLNMAMAGLRDLSIIATPPPNRLAVQTFVTAWDNALLREAFQRELARGGQLYFLHN
DVESIGRMQRELSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDI
PNANTIVINRADRFGLAQLHQLRGRVGRSHHRAYAYLLVPDRRSITGDAQKRLDAIASMD
ELGAGFTLATHDLEIRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDAG
EEARGAEVELHVPALIPDDYLPDVHTRLTLYKRISSARDSEQLRELQVEMIDRFGLLPDA
VKHLFAVAELKLQANTLGIRKLELGENGGRIVFESKPNIDPMTIIQMIQKQPKLYAMDGP
DKLKVKLPLPEAADRFNAARGLLAALSPR
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctctttccttccccgttccgccgctgcccaaatccggccagctccgcgccttc
tggcgcgcccctgcgtcctcgaccgcgctggcctggcacatcgcctgcgccgccgcggcg
catcgcgggccgctgctggtggtcgcacgcgacaaccagagcgcgcaccagatcgaggcc
gacctgcacacgctgctggccggcgacggcagcctgccggtggtgccgttcccggattgg
gaaaccctgccctacgaccagttcagcccgcacccggacatcgtcagccagcgcctgtcg
gcgctgcaccggctgccgacgctgaagcagggcatcgtggtggtgccggtgcagacgctg
atgcagcgcgtggcgccgttgcgctacatcgtcggcggcagtttcgacctgcacgtgggc
cagcgcctggacctggaggcggaaaagcgccgcctggaaagcgccggctaccgcaacgtg
ccgcaggtgatggacccgggcgatttcgcggtgcgcggcggcctgctcgacgtgtacccg
atgggctcggacacgccgttgcggatcgaactgctggacgaggacatcgactcgatccgc
gccttcgacccggaatcgcagcgctcgctggaccacgtgcaggcggtgaagatgctgccc
ggccgcgaagtgccgatggacgatgccagcgtggagcgggtgctggccacgctgcgcgaa
cgcttcgacgtcgacacccggcgcagcgcgctgtaccaggacctgaaggcgcggctggcg
ccgtcgggcatcgaatactacctgccgctgttcttccaggagacgcgcggcgccggcgcc
gcggcgcgcgatgccaccgccaccctgttcgactatctgggcgagtcggtgctgccgctg
ctcgcgccgggcgtgggcgccgccgccgatgcgttctgggcgcagacccagaaccgctac
gagcagcgccgccacgacgtggagcgcccgctgctggcgcctgaggagctgtaccaggcg
ccggacacgctgcgcgaaaagctcaacggcctgccgcgcatcgaggtgtgggccgccgac
cacgcgcgcatcgacgaggcgcaggcgctgggcgaccagccgctgccgccgctgccggtg
gcggccaaggacgccgctccggccgaggcgctgaagagcttcctcggcagctacccgggc
cgcgtgctgatcgccgccgactcgccgggccgccgcgaagcgctgctggaagtcctggcc
gcggcagggctgaagcccgaggtgatcccaaacttcgccgcattcctccctccccccccc
gggagaaggtggcgcgaagcgccggatgagggtgcggcgctcgcgccgtcctcatcgaag
aaggctactgcttcgtcagcgtctttaacagccgcgcagaagcaggtcgcgagcggccgt
accctcaccccaacccctctcccggggggagaggggctcggcggctccggcgggctcgat
gctgcgccggctgcattcgccatcgccgtggcaccgctggacgacggcttcgccctcgac
gatccgcatatcgcggtgctcaccgagcgccagctgttccccgagcgcgccggccagccg
cggcgcacgcgccgcgccgggcgcgagccggaagcgatcatccgcgacctcggcgagctg
accgaaggcgcgccgatcgtgcacgaggaccacggcgtcggccgctaccgcgggctgatc
gtgctcgatgccggcggcatgcccggcgagttcctggagatcgaatacgccaagggcgac
cgcctgtacgtgccggtcgcgcagctgcacctgatcagccgctactccggcgcctcggcc
gagaccgcgccgctgcattcgctgggcggcgagcaatggaccaaggccaagcgccgcgcc
gccgagaaagtgcgcgacgtggccgccgaactgctggagatccaggcgcggcgccgcgcc
cgcgccggtctggcgttgcaggtggaccgggccatgtacgaaccgttcgcggccggcttc
ccgttcgaggagaccaccgaccagttggccgcgatcgaggccaccttgcgcgacctgggc
agcagccagccgatggaccgcgtggtctgcggcgacgtcggcttcggcaagaccgaggtc
gcggtgcgcgccgcgttcgccgcggccagcgccggcaagcaggtggcggtgctggtgccg
accacgctgttggccgaacagcactaccgcaatttccgcgaccgcttcgccgactggccg
ttgcgggtggaagtgctatcgcgcttcaagagcgccaaggagatcaaggccgagctggag
aaggtcgccgacggcggcatcgacgtgatcatcggcacccaccgcctgctgcagccggac
gtgaagttcaaggacctgggcctggtcgtggtcgacgaggaacagcgcttcggcgtgcgc
cagaaggaagcgctgaaggcgctgcgcgccaacgtgcacctgctcaccctcaccgccacg
ccgatcccgcgcacgctgaacatggccatggccgggctgcgcgacctgtcgatcatcgcc
accccgccgccgaaccggctggcggtgcagaccttcgtcactgcctgggacaacgcgctg
ctgcgcgaggcgttccagcgtgagctggcgcgcggcggccagctgtacttcctgcacaac
gacgtggaaagcatcggccgcatgcagcgcgagctcagcgagctggtgcccgaggcgcgc
atcggcatcgcccacgggcagatgcccgagcgcgagctggaacgggtgatgctggatttc
cagaagcagcgcttcaacgtgctgctgtcgaccacgatcatcgaatcgggcatcgacatc
cccaacgccaacaccatcgtcatcaaccgagccgaccgcttcggcctggcccagctgcac
cagttgcgcggccgcgtcggccgctcgcaccaccgcgcctacgcctacctgctggtcccg
gaccggcgcagcatcaccggcgatgcgcaaaagcggctggacgcgatcgcctcgatggac
gagctcggtgccggcttcaccctggccacccacgacctggaaatccgcggcgccggcgaa
ctgctcggcgaggaccagagcgggcagatggccgaggttggcttcagcctgtacaccgag
ctgctggaacgcgcggtgcgcagcatccgccagggcaagctgccggacctggacgccggc
gaggaagcgcgcggcgccgaagtggaactgcatgtgccggcgctgatcccggacgactac
ctgcccgacgtgcacacccgcctgaccctgtacaagcgcatctccagcgcgcgcgacagc
gagcagctgcgcgaactgcaggtggagatgatcgaccgcttcggcctgctgccggatgcg
gtgaagcacctgttcgcggtcgccgagctgaagctgcaggccaacacgctgggcatccgc
aaactggaacttggcgagaacggcggccgcatcgtgttcgagtccaagcccaatatcgat
ccgatgaccatcatccagatgatccagaagcagcccaagctgtacgcgatggacggcccg
gacaagctgaaggtgaagctgccgctgccggaagcggcggaccgcttcaacgccgcgcgc
ggcctgctggcggcactgtcgccgcggtga
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