Xanthomonas sp. GW: HEP73_01607
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Entry
HEP73_01607 CDS
T08755
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
xag
Xanthomonas sp. GW
Pathway
xag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP73_01607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xag03019
]
HEP73_01607
03016 Transfer RNA biogenesis [BR:
xag03016
]
HEP73_01607
Enzymes [BR:
xag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HEP73_01607
Messenger RNA biogenesis [BR:
xag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HEP73_01607
Transfer RNA biogenesis [BR:
xag03016
]
Prokaryotic type
tRNA degradation factors
HEP73_01607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
QNH20704
LinkDB
All DBs
Position
1930634..1933102
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AA seq
822 aa
AA seq
DB search
MTNRKTKSGKPGKSASNDTPASKASAPAAPPPPKKSKMPSWMPSLPSFLRRSPKPPLQPL
HPPEPVSAPSSRKKPAAAVADPFAAREAERYAEPIASREAILQLLDRCDGPQTLEELAGQ
LGLTEPSRMEALSKRLGAMLREAQLVQNRRGGYAPVQQTNLIPGVVIANPDGFGFLRPDE
GGDDLFLPPYEMRKVLHGDRALANVTGIDRRGRREGSIARVIERGLSRLIGRFSMEGGIA
YVVPDDKRIQRNIQIPTDAMGEARDGQLVVCELTSTPDGRRPPIGKIIAVLGDKLTPSLV
VETAIHGRELPYEFPQAVLDEAAAVPMTVEPAAIKGRVDLRQTPLVTIDGADAKDFDDAV
FCEPNAEGFRLVVAIADVSHYVRPGTPLDVEAIRRATSVYFPGFVVPMLPETLSNGICSL
NPKVDRMCFVCDMQIDRQGEVAGARFYEAVMNSHARLTYDQVWQAVGEKDEQVRKDVAAV
LPQIERLYQLFHVLAKARSRRGAIEFETSEVRFVLDNTGEVTQAGMLVRNDAHKLIEECM
IAANVAAARHLLEARIPAPYRVHERPPESKYADLLEFLKEFKLSLPPWSKVVPGDYTKLL
KKVRERPDAALLESVLLRSQSMAVYSPDNAGHFGLALEAYAHFTSPIRRYPDLLVHRAIK
YALTHGAPDKYLYSPREMAALALQCSERERRADEAEREVDERYRAAWMEKHVGGQFDGVV
SGVTSFGLFVELDQSKVNGLIHVTQLPQDYYQFDAVRKTLSGERRGMQFRLGDRVRILVL
KASMEERKIDFRLVVEGEPLTDMPPPPERGQQQPAKRKKKKY
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgaccaatagaaaaaccaagtccggcaagcccggcaaatccgcatccaacgacacgccc
gccagcaaggccagcgccccggcggctccgcctccgccgaagaaatccaagatgccgtcg
tggatgcccagcctccccagtttcctgcggcgcagccccaagccgccgttgcagccgctg
catccgcctgagccggtgtccgcaccgtcctcgcgcaagaagccggccgctgcggtggcc
gatccgttcgccgcccgcgaggccgagcgctatgccgagccgatcgctagccgcgaggcg
atcctgcagttgctggaccgctgcgacggcccgcagacgctggaagaactcgccggccag
ctcggcctgaccgaaccttcgcgcatggaggcattgagcaagcgcctgggcgcgatgctg
cgcgaggcgcaactggtgcagaaccgccgcggcggctacgcgccggtgcagcagaccaac
ctgatccccggtgtggtgatcgccaatcccgacggcttcggcttcctgcgtccggacgag
ggcggcgacgacctgttcctgccgccctatgaaatgcgcaaggtgctgcatggcgaccgc
gcgctggccaacgtcaccggcatcgaccgccgcggccgccgcgaaggcagcatcgcgcgc
gtgatcgagcgcggcctgagccggctgatcggccgcttcagcatggaaggcggcatcgcc
tacgtggtgccggacgacaagcgcatccaacgcaacatccagatcccgaccgatgcgatg
ggcgaggcccgcgacggccagttggtggtgtgcgaactcacctccaccccggacgggcgg
cgcccgccgatcggcaagatcatcgcggtgctcggcgacaagctgacgccgtcgctggtg
gtggaaaccgccatccacggccgcgagctgccgtacgaattcccgcaggcggtgctcgac
gaagccgcggcggtgccgatgacggtggagccggccgcgatcaagggccgcgttgacctg
cggcagaccccgctggtgaccatcgacggcgccgacgccaaggacttcgacgacgcggtg
ttctgcgagccgaacgccgaaggcttccgcctggtggtggcgatcgccgacgtgtcgcat
tatgtgcgcccgggcacgccgctggacgtggaagcgatccgccgcgcgacctcggtgtat
ttccccggtttcgtggtgccgatgctgccggagacgctgtccaacggcatctgttcgctc
aacccgaaggtcgaccgcatgtgcttcgtctgcgacatgcagatcgatcgccagggcgag
gtggccggcgcgcgcttctacgaggcggtgatgaattcgcatgcgcggctcacctacgac
caggtgtggcaggcggtgggcgagaaagacgagcaggtgcgcaaggacgtggccgcggtg
ctgccgcagatcgagcgcctgtaccagctgttccacgtgctggccaaggcgcgttcgcgc
cgcggcgcgatcgagttcgagacttcggaagtgcgcttcgtgctcgacaacaccggcgaa
gtgacccaggccggcatgctggtgcgcaacgacgcgcacaagctgatcgaggaatgcatg
atcgccgccaacgtggccgcggcacggcacttgctggaggcgcgcatcccggcgccgtac
cgcgtgcacgagcggccgccggagtccaagtacgccgacctgctggagttcctcaaggaa
ttcaagctgagcctgccgccatggagcaaggtggtgccgggcgactacaccaagctgctg
aagaaggtgcgcgagcgccccgatgcggccttgctggagtcggtgctgctgcgcagccag
agcatggcggtgtactcgccggacaacgccggccacttcggcctggcgctggaggcgtac
gcgcacttcacttcgccgatccgccgctatcccgacctgctggtgcaccgcgcgatcaag
tacgcgctgacccacggcgcgccggacaagtacctgtattcgccgcgcgagatggcggcg
ctggcgttgcagtgctccgagcgcgagcgccgtgccgacgaggccgagcgcgaggtcgac
gagcgctaccgcgcggcgtggatggaaaagcacgtcggcggccagttcgacggcgtggtc
agcggcgtcaccagcttcggcctgttcgtggagctggaccagtccaaggtcaacggcctg
atccacgtgacccagctgccgcaggactattaccagttcgacgcggtgcgcaagaccctg
tccggcgagcgccgcggcatgcagttccggctcggcgaccgggtccgcatcctggtgctg
aaggcgagcatggaagagcgcaagatcgacttccgcctggtggtggaaggcgagccgctg
accgacatgccgccgccgccggaacgtgggcagcagcagccggccaagcgcaagaaaaag
aagtactga
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