KEGG   Xanthomonas sp. GW: HEP73_02017
Entry
HEP73_02017       CDS       T08755                                 
Symbol
rne
Name
(GenBank) Ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
xag  Xanthomonas sp. GW
Pathway
xag03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xag00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HEP73_02017 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xag03019]
    HEP73_02017 (rne)
   03009 Ribosome biogenesis [BR:xag03009]
    HEP73_02017 (rne)
Enzymes [BR:xag01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     HEP73_02017 (rne)
Messenger RNA biogenesis [BR:xag03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HEP73_02017 (rne)
Ribosome biogenesis [BR:xag03009]
 Prokaryotic type
  rRNA processing factors
   HEP73_02017 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: QNH21106
UniProt: A0A7G7SWI6
LinkDB
Position
complement(2426633..2430226)
AA seq 1197 aa
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GGERHGFLPLKEISRDYFQAGVDHNKATIRELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQVWKSIAEAALAKPAPFLIYQESRLIIRALRDYLRADIGEILVDTPEMYGDAQ
EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LQNALKYDRARVQIGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESMSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRRALSEIEKRHDAPIVIVADEQLHTPH
YEVTRLRENELGEESAKPSYQRNTPRKLPVHALTKAQLNIPAPAVTNVKHSQPAPVREVV
EAPEPVAAPVQVQAPAPAPVAAPATGVVGWLKRIFGAGESPAPAPTANEPAQRQRANDGN
RNRNDRGDRNARRDGNRNGGQGGNAARGNGGNVRRDERRSGNGGGNAQGGQQNLAPKPPR
NEQAPQQAKPQQQNPQQQPKAPKQQQPQNPPRQPKPQQDPAQAALQGDKPQRQPRQDEVA
AKPVTAPAAAAQDATTLAAAAVAGGAVALSGDAPASEANTTASAPVAAQPNPAPADVDER
ESAAETAQAVPVGENGDADDANGEAGGRRRRGRRGGRRRRRGNGEAGSGSEGAAFDDNDL
DAGDSDSDGETAPAPSRSQPEFDFDDDAAPAEAAEAKPQQAPRPPREKREPRQPRHEQTA
NAPTPVVAAASVVPQAESEAVPAQQAAPVAATAAPQTEDSTAQVQAAPVAAAAAIATAPS
VAETAAFDAAPVATAQAETVASVAAAPLPPVGEAPAARSEAVPAAEPAASIVTESAASEA
APPETMEDALQPTPAPIVEQPVPVATTKRDAGMETVAASAAPVEEPVTASTTDSKPQQDA
MTTQQPLAEEEAPSKPAYVPVQTTLLDVFHEEQPAAAVAPTPVHTPVAAAPVSDSAESRH
VGDAEPAPAAAAGNGLFDAPPAAPADAPVSVAQHQPHASKSGESENDDDKEHKDRAS
NT seq 3594 nt   +upstreamnt  +downstreamnt
atgaagcgaatgctgatcaacgccacgcaggcggaagaactgcgtgtggccatcgtggac
ggccagaccctgtacgacatcgacatcgagcagccgtccaaggaacagaagaagtccaac
atctacaagggccggatcacgcggctcgaaccctcgctcgaagccgccttcgtcgaatac
ggcggcgagcgacacggcttcctgccgctgaaggaaatctcccgcgactacttccaggcc
ggcgtcgaccacaacaaggcgacgatccgcgaactgctgcgcgagggccaggaggtcgtt
gtccaggtggacaaggaagaacgcggcaacaagggcgccgcgctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgccgaactcgcccagcgccggcggcgtctcgcgc
cggatcgagggcgaagaccgcgccgcgctgaaggaagcgctggacaagctgaacattccc
gacgacatgggcgtgatcatccgcaccgctggtgtcggccgcgatgccgaagagctgcag
tgggacctggactacctgctgcaggtgtggaagtcgatcgccgaggccgcactggccaag
ccggcgccgttcctgatctaccaggaatcgcgactgatcatccgcgccctgcgcgactac
ctgcgcgccgatatcggcgagatcctggtcgatacccccgagatgtacggcgatgcccag
gaattcatgcagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgac
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaggcggcctacgagcgcagc
gtgcgcctgccgtccggcggctcgatcgtggtcgaccagaccgaagcgctgaccgcggtg
gacgtcaactcctcgcgcgcgaccaagggcagcgacatcgaggacaccgcgttccagacc
aacctggaggccgccgaagaggtcgcccgccagctgcgcctgcgcgacctgggtggcctg
gtggtcatcgacttcatcgacatggcctccaacaagcaccagcgcgaagtcgagaaccgc
ctgcagaacgcgctcaagtacgaccgtgcgcgggtgcagatcggccgcatctcgcgcttc
ggcctgctcgagatgagccgccagcgcctgcgcccgtcgctgggcgagtccagccagatc
gtctgcccgcgttgcgacggccatggccgcatgcgcagcgtcgagtcgatgtcgctgtcg
atcatccgtgtcgccgaagagcatgcgatgaaggagaacaccggacaggtgctggtacag
gccccggtggagatcgccaactacctgctcaacgagaagcgccgcgcgctcagcgagatc
gaaaagcgccacgacgcgccgatcgtcatcgtcgccgacgagcaactgcacaccccgcac
tacgaagtgacccgcctgcgcgagaacgagctcggcgaggaaagcgccaagcccagctac
cagcgcaacactccgcgcaagctgccggtgcatgcgctgaccaaggcgcagctgaacatt
ccggcacctgccgtgaccaatgtgaagcactcgcagccggccccggtgcgcgaagtggtc
gaggcgcccgaaccggtcgctgcgcccgtgcaggtccaggctccggcccccgccccggtc
gcggctccggccaccggcgtggtcggctggctgaagcggatcttcggtgccggcgaaagc
ccggccccggcgccgaccgcgaacgaaccggcgcagcgccagcgcgccaacgacggcaac
cgcaaccgcaacgaccgcggcgaccgcaacgcgcgtcgcgacggcaaccgcaacggcggc
cagggcggcaatgccgcacgtggcaacggcggcaacgtgcgccgcgacgagcgtcgttcg
ggtaacggcggcggcaacgcgcagggcggccagcagaaccttgcgcccaagccgccgcgc
aacgagcaggcgccgcagcaggccaagccgcagcagcagaacccgcagcagcagccgaag
gcgccgaagcaacagcagccgcagaacccgccgcgccagcccaagccgcagcaggacccg
gcgcaggccgccctgcagggcgacaagccgcagcgccagccgcgtcaggacgaggtcgcg
gccaagcccgttaccgcacctgccgctgcggcgcaggacgccaccacgctcgcggccgcg
gcagtggccggcggtgccgtcgcgctgagcggcgatgcgccggccagcgaggccaacacc
acggcctcggccccggttgcggcgcagccgaacccggcaccggcagacgtcgatgagcgc
gagagcgccgcggaaaccgcgcaggcggtgccggtcggcgagaacggcgacgccgacgac
gccaatggcgaggccggtggccgccgccgtcgtggccgtcgtggcggccgtcgccgtcgt
cgcggcaatggcgaagccggcagcggcagcgagggtgcagcgttcgacgacaacgacctg
gatgccggcgacagcgacagcgacggcgaaaccgcgccggcgccgagccgcagccagccg
gagttcgacttcgacgacgacgcagcgccggccgaggccgccgaggccaagccgcagcaa
gcgccgcgtccgccgcgggagaagcgcgagccgcgccagccgcggcacgagcagaccgct
aacgccccgacgccggtcgtcgcagctgcaagcgtggtgccgcaggccgagagcgaggcc
gtgccggcgcagcaggccgcaccggtagccgcaaccgcagcgccgcagaccgaggacagc
actgcgcaagtgcaggccgcgccggtggccgcagccgcagcgatcgcaaccgcgccttcc
gttgccgaaacggcagcgttcgacgcggcaccagtcgccaccgcgcaagcggaaacggtg
gcgtcggtagcggcagcaccgctgccgcccgtcggcgaggcgccagcggcgcgttccgag
gcagtgcctgccgcggagcctgctgcgtcgatcgtcaccgagtcggccgcttccgaagcg
gcaccgccggagaccatggaggatgcactgcagccgacaccggcgccgatcgtcgagcag
cccgtcccggtcgccacgaccaagcgcgacgccggaatggaaaccgttgcagcgtcggcc
gcgccggtcgaggagccggtcacggcatccacgacggacagcaagccgcagcaggacgcc
atgacgacgcagcaaccgctcgccgaggaagaagcgcccagcaagccggcctacgtgccg
gtgcagaccacactgctggacgtcttccatgaagagcagccggccgccgcggtcgcaccg
acgccggtgcacacgccagtcgctgccgcgccggtgtcggacagcgccgaaagccgccac
gtcggcgatgccgaaccggcacctgcagctgccgctggcaacggcctgttcgatgcgccg
cccgccgctccggcggacgcaccggtcagcgtcgcccagcaccagccgcatgccagcaag
tccggcgaaagcgaaaacgacgacgacaaggagcacaaggaccgcgccagctga

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