Xanthomonas sp. SI: HEP75_00556
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Entry
HEP75_00556 CDS
T10656
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
xai Xanthomonas sp. SI
Pathway
xai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP75_00556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xai03021
]
HEP75_00556
03019 Messenger RNA biogenesis [BR:
xai03019
]
HEP75_00556
Transcription machinery [BR:
xai03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HEP75_00556
Messenger RNA biogenesis [BR:
xai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HEP75_00556
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
Spore_III_AA
OB_RNB
AAA_22
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QNH11138
LinkDB
All DBs
Position
complement(641643..643481)
Genome browser
AA seq
612 aa
AA seq
DB search
MSDNTTTEPGSVDAPAEKRARKPRVSKAVAGADGGAEHGAPAQPNLPLNQAPAQSDAPRP
APQERQERQERAAPQEHAQAPSQQPQSQPAPASGGDAQGQGGGNQNDGGEPREGGNPRFN
NQNPQNQNNQNNQQGNRRDRFRNRRDRDRGGGGGGGGGGGGGRFPDNGLPNDTGANEVFV
PRPHANVPEGFPIYSLSDLKRMPAQKLLDIAEQLNIQDGVARARKQDVIFALLKVLTRHG
EGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKD
GERYFALSIVDTINGEPLEASKNKVLFENLTALFPRKRFTLERGNGSSEDISGRILDLMA
PQGKGQRALIVSPPKAGKTMLMQQVATAITTNHPDVHMIVLLIDERPEEVTEMQRTVRGE
VISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSGKVLS
GGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSEVHLN
RRIAEKRVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPMDEIAAMEFLLDKMKNT
KSNDEFFGSMKR
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgataacaccaccaccgaacccgggagcgtcgacgcccccgccgaaaagcgcgcg
cgcaagccccgtgtcagcaaggccgtcgccggcgctgacggcggagccgagcacggcgca
ccggcgcagccgaacctgccgctgaaccaggcgccggcccagtccgacgcgccgcgtccg
gcgccgcaagaacgccaggaacgccaggagcgcgccgcgccgcaggaacacgcgcaggcg
ccgtcgcagcagccccagtcccagcccgctcccgcctccggcggcgatgcccagggccag
ggcggcggcaaccagaacgacggcggcgagccgcgcgaaggcggcaacccgcgcttcaac
aaccagaatccgcagaaccagaacaaccagaacaaccagcagggcaatcgtcgcgaccgc
ttccgcaatcgccgcgatcgcgatcgtggcggcggtggaggcggtggtggtggcggcggc
ggcggtcgcttcccggacaacggcctgcccaacgacaccggcgccaacgaagtgttcgtg
ccgcgcccgcacgccaacgtgccggaaggtttcccgatctactcgctgagcgacctgaag
cggatgccggcgcagaagctgctggacatcgccgagcagctcaacatccaggacggcgtg
gcccgcgcgcgcaagcaggacgtgatcttcgcgctgctgaaggtgctgacccgccacggc
gaaggcgtcgccgccgacggcgtgctggaaatcctgccggacggcttcggcttcctgcgc
gcggccgaggccagctacctggccggcccggacgacacctacatctcgcccagccagatc
cgccgcttcaacctgcgcaccggcgaccacctgtccggccgcatccgcttcccgaaggac
ggcgaacgctacttcgcgctgtcgatcgtcgacacgatcaacggcgagccgctggaagcg
agcaagaacaaggtgctgttcgagaacctgaccgcgctgttcccgcgcaagcgcttcacc
ctggagcgcggcaacggttcctcggaagacatctccgggcgcatcctcgatctgatggcg
ccgcagggcaagggccagcgcgcgctgatcgtgtccccgcccaaggccggcaagaccatg
ctgatgcagcaggtggccacggcgatcaccaccaaccatcccgacgtgcacatgatcgtg
ctgctgatcgacgagcggccggaagaagtgaccgaaatgcagcgcaccgtgcgcggcgag
gtcatctcctccaccttcgacgagccggccgcgcgccacgtgcaggtcgccgagatggtg
atcgagcgcgccaagcgcctggtcgagcacaagaaggacgtggtgatcctgctcgactcg
atcacccgcctggcccgcgcctacaacaacgtggtgccgtcctccggcaaggtgctcagc
ggcggcgtcgacgccaatgcactgcaccgcccgaagcgtttcttcggcgcggcgcgtaac
gtcgaggaaggcggctcgctgaccatcatcgccacggcgctggtggaaaccggcagcaag
atggacgaggtgatctacgaagagttcaagggcaccggcaacagcgaagtgcacctgaac
cgccgtatcgccgagaagcgcgtgtacccggcgatcgacatcaaccgttccggtacccgt
cgcgaagacctgctgatcgagccggagctgctgcagaagatctggatcctgcgcaagctg
ctgcatccgatggacgagatcgcggcgatggagttcctgctggacaagatgaagaacacc
aagtccaacgacgagttcttcggttcgatgaagcgctga
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