Xanthomonas sp. SI: HEP75_01506
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Entry
HEP75_01506 CDS
T10656
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xai Xanthomonas sp. SI
Pathway
xai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP75_01506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xai03019
]
HEP75_01506
03009 Ribosome biogenesis [BR:
xai03009
]
HEP75_01506
Enzymes [BR:
xai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HEP75_01506
Messenger RNA biogenesis [BR:
xai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HEP75_01506
Ribosome biogenesis [BR:
xai03009
]
Prokaryotic type
rRNA helicases
HEP75_01506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QNH12083
LinkDB
All DBs
Position
1888274..1890286
Genome browser
AA seq
670 aa
AA seq
DB search
MSQDIPAPLLFADLGLSPAVMKAVADVGYESPSPIQAATIPALLTGRDLLGQAQTGTGKT
AAFALPILSRLDFNQRKPQALVLAPTRELAIQVAEAFHRYAGAIPGFQVLPVYGGQPYVQ
QLSALKRGVHVVVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PASRQVALFSATMPTAIKRIAQTYLNDPAEVIIASKTTTSANVRQRYWAVSGLHKLDALT
RILEVEPFDAMIVFARTKAATDELAQKLQARGLAAAAINGDIQQSQRERVIQQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPREKGML
RAIERATRQPIEEMQLPSVDAVNDQRVTRFMEKISETIASGGIDTYRDLLQRFETEKNVP
MVEVAAALARLLQGDTPLLLAPERARPPQGERFERPTAERRERADRGERTERPKFEPKFD
REARPPRRDEGERAPPRAPRPAPAGHGPDYDYQRDVGSFEAPRRDKAPKAPRGEPEVGME
TYRIEVGHQHGVKPANIVGAIANEAGLESKYIGRIDIHDDHSVLDLPADMPRELLTHLKK
VWVSGQQLQMRKLDGDAAAGASAPFKPKFARAAGKPGGRPNAAGPRPAGAATRMADKAGD
RPPRKGPPKR
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagatatccccgcgccgctgctgttcgcagatctcggcctctcgcctgctgtg
atgaaagccgtcgccgatgtcggctacgagtcgccgtcgccgatccaggccgccaccatt
cccgcgctgctgaccggccgcgacctgctcggccaggcccagaccggcaccggcaagacc
gccgcgttcgcgctgccgatcctgtcgcggctggacttcaaccagcgcaagccgcaggcg
ctggtgctggcgccgacccgcgagctggcgatccaggtcgccgaggcgttccatcgctac
gccggcgcgatccccggcttccaggtgctgccggtgtacggcggccagccctacgtgcag
cagctgtcggcgctcaagcgcggcgtgcacgtggtggtgggcaccccggggcgggtcatc
gaccacctggagcgcggcaccctggatctgtcggagctgaagacgctggtgctcgacgag
gccgacgagatgctgcgcatgggcttcatcgacgacgtcgaggcggtgctgaagaagctg
ccggcctcgcgccaggtggcgctgttctcggcgaccatgccgaccgcgatcaagcgcatc
gcgcagacctatctgaacgatccggccgaagtcatcatcgcctccaagaccaccacgtcg
gcgaatgtccgccagcgttactgggcggtcagcggcttgcacaagctcgatgcgctgacc
cgcatcctggaagtggagccgttcgacgcgatgatcgtgttcgcgcgcaccaaggccgcc
accgacgagctggcgcagaagctgcaggcgcgcggcctggccgccgcggcgatcaacggc
gacatccagcagtcgcagcgcgagcgggtgatccagcagctcaaggacggcaagctcgac
atcctggtcgccaccgacgtggccgcgcgcggcctggacgtggagcggatcagccacgtg
ctgaactacgacatcccgtacgacaccgaaagctacgtgcaccgcatcggccgcaccggc
cgcgccggccgcagcggcgaggcgatcctgttcgtcagcccgcgcgagaagggcatgctg
cgcgcgatcgagcgcgccacccggcagccgatcgaagagatgcagttgccgagcgtggac
gcggtcaacgaccagcgcgtgacccgcttcatggaaaagatcagcgagaccatcgccagc
ggcggcatcgacacctaccgcgacctgctgcagcgtttcgagaccgagaagaacgtgccg
atggtcgaagtggccgcggcgctggcgcgcctgctgcagggcgacacgccgctgctgctg
gcgccggagcgcgcgcgtccgccgcagggcgagcgcttcgagcggcccactgccgagcgc
cgcgagcgcgccgaccgcggcgagcgcacggaacgtcccaagttcgagcccaagttcgac
cgcgaagcgcgcccgccgcgccgcgacgagggcgagcgcgcgccgccgcgtgcgccgcgt
cccgcgccggccgggcacggtcccgactacgactaccagcgcgacgtcggcagcttcgag
gccccgcgccgcgacaaggcgcccaaggcgccgcgcggcgagccggaagtgggcatggag
acctaccgcatcgaggtcggccaccagcacggggtcaagccggccaacatcgtcggcgcg
atcgccaacgaggccggcctggagagcaagtacatcggccgcatcgacatccacgacgac
cattcggtgctggacctgccggcggacatgccgcgcgagctgctgacccacctgaagaag
gtctgggtctcgggtcagcaactgcagatgcgcaagctcgacggcgacgccgccgccggc
gccagcgcgccgttcaagccgaagttcgcgcgcgccgccggcaagcccggcggccgcccg
aacgcggccggcccgcgcccggccggcgccgccacccgcatggccgacaaggccggcgat
cgcccgccgcgcaagggtccgccgaagcgctga
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