Xanthomonas sp. SI: HEP75_02532
Help
Entry
HEP75_02532 CDS
T10656
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xai Xanthomonas sp. SI
Pathway
xai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP75_02532 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xai03019
]
HEP75_02532 (rne)
03009 Ribosome biogenesis [BR:
xai03009
]
HEP75_02532 (rne)
Enzymes [BR:
xai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HEP75_02532 (rne)
Messenger RNA biogenesis [BR:
xai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HEP75_02532 (rne)
Ribosome biogenesis [BR:
xai03009
]
Prokaryotic type
rRNA processing factors
HEP75_02532 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QNH13085
LinkDB
All DBs
Position
3091139..3094735
Genome browser
AA seq
1198 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GGERHGFLPLKEISRDYFQAGVDHNKATIRELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQVWKSIAEAALAKPAPFLIYQESRLIIRALRDYLRADIGEILVDTPEMYGDAQ
EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LQNALKYDRARVQIGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESMSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRRALSEIEKRHDAPIVIVADEQLHTPH
YEVTRLRENELGEESAKPSYQRNTPRKLPVHALTKAQLNIPAPAVTNVKHSQPAPVREVV
ETPEPVAAPVQVQAPAAAPVAAPATGVVGWLKRIFGAGESPAPAPTANEPAQRQRAHDGN
RNRNDRGDRNARRDGNRNGGQGGNAARGNGGNVRRDERRPGNGGGNAQGGQQNLAPKPPR
NEQAPQQAKPQQQNPQQQPKAPKQQQPQNPPRQPKPQQDPAQAALQGDKPQRQPRQDEVA
AKPVTAPAAATQDATTIAAAAVASGAVALSGDAPASEANTTASAPVAAQPNPAPADVDER
ESAAETAQAVPVGENGDADDANGEAGGRRRRGRRGGRRRRRGNGEAGSGSEGAAFDDNDL
DAGDSDSDGETAPAPSRSQPEFDFDDDAAPAEAAEAKPQQAPRPPREKREPRQPRHEQTA
NAPTPVVAAASVVPQAESEALPAQQAAPVAATAAPQTEDGTAQVQAAPVAAAAAIATAPS
VAETAAVDAAPVATAQAETVAPVVAAPLPPVAEAPAARSEAVPAAEPAASIVTESAASEA
APPETIEDALQPTPAPIVEQPVPVATTKRDAGMETVAASAAPIEEPVTASTTDSKPQQDA
TTTQQPLAEEEAPSKPAYVPVQTTLLDVFHEEQPAAAVAPTPVHTPVAAAPVSDSAESRH
VGDAEPAPAAAAAAGNGLFDAPPAAPADAPVSVAQHQPHASKSGESESDDKEHKDRAS
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgccacgcaggcggaagaactgcgtgtggccatcgtggac
ggccagaccctgtacgacatcgacatcgagcagccgtccaaggaacagaagaagtccaac
atctacaagggccggatcacgcggctcgaaccctcgctcgaagccgccttcgtcgaatac
ggcggcgagcgccacggcttcctgccgctgaaggaaatctcccgcgactacttccaggcc
ggcgtcgaccacaacaaggcgacgatccgcgaactgctgcgcgagggccaggaggtcgtt
gtccaggtggacaaggaagaacgcggcaacaagggcgccgcgctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgccgaactcgcccagcgccggcggcgtctcgcgc
cggatcgagggcgaggaccgcgccgcgctgaaggaagcgctggacaagctgaacatcccc
gacgacatgggcgtgatcatccgcactgccggcgtcggccgcgatgccgaagagctgcag
tgggacctggactacctgcttcaggtgtggaagtcgatcgccgaggccgcgctggccaag
ccggcgccgttcctgatctaccaggaatcgcggctgatcatccgcgccctgcgcgactac
ctgcgcgccgacatcggcgagatcctggtcgacacccccgagatgtacggcgatgcccag
gagttcatgcagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgac
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaggcggcctacgagcgcagc
gtgcgcctgccgtccggcggctcgatcgtggtcgaccagaccgaagcgctgaccgcggtg
gacgtcaactcctcgcgcgcgaccaagggtagcgacatcgaggacaccgcgttccagacc
aacctggaggcggccgaagaggtcgcccgccagctgcgcctgcgcgacctcggcggcctg
gtggtcatcgacttcatcgacatggcctccaacaagcaccagcgcgaagtcgagaaccgc
ctgcagaacgcgctcaagtacgatcgcgcgcgggtgcagatcggccgcatctcgcgcttc
ggcctgctcgagatgagccgccagcgcctgcgtccgtcgctgggcgagtccagccagatc
gtctgcccgcgttgcgacggccatggccggatgcgcagcgtcgagtcgatgtcgctgtcg
atcatccgcgtcgccgaagagcatgcgatgaaggagaacaccggacaggtgctggtgcag
gccccggtggagatcgccaactacctgctcaacgagaagcgccgcgcgctcagcgagatc
gagaagcgccacgacgcgccaatcgtcatcgtcgccgacgagcagctgcacaccccgcac
tacgaagtgacccgcctgcgcgagaacgagctcggcgaggaaagcgccaagcccagctac
cagcgcaataccccgcgcaagctgccggtgcatgcgctgaccaaggcgcagctgaacatt
ccggcgccggcggtgaccaacgtgaagcactcgcagccggccccggtgcgcgaagtggtc
gagacgcccgaaccggtcgctgcacccgtgcaggtccaggccccggccgccgccccggtc
gcggctccggccaccggcgtggtcggctggctgaagcggatcttcggtgctggcgaaagc
ccggccccggcgccgaccgcgaacgaaccggcgcagcgtcaacgcgcccatgacggcaac
cgcaatcgcaacgaccgcggcgaccgcaacgcgcgtcgcgacggcaaccgcaacggcggc
cagggcggcaatgccgcacgtggcaacggcggcaacgtgcgccgcgacgagcgccgtccg
ggcaacggcggcggcaacgcgcagggcggccagcagaacctcgcgcccaagccgccgcgc
aacgagcaggcgccgcagcaggccaagccgcagcagcagaacccgcagcagcagccgaag
gcaccgaagcagcagcagccgcagaacccgccgcgtcagcccaagccgcagcaggacccg
gcccaggccgcgctgcagggcgacaagccgcagcgtcaaccgcgccaggacgaggtcgcg
gccaagcccgtcaccgcacctgccgctgcgacgcaggacgccaccacgatcgcggccgct
gccgtggccagcggtgccgtcgcgctgagcggcgatgcgccggccagcgaggccaacacc
acggcctcggccccggttgcggcgcaaccgaacccggcaccggcagacgtcgatgagcgc
gagagcgccgcggaaaccgcgcaggcggtgccggtcggcgagaacggcgacgccgacgac
gccaatggcgaggccggtggccgccgccgtcgtggccgtcgtggcggccgtcgccgtcgt
cgcggcaatggcgaagccggcagcggcagcgagggtgcagcgttcgacgacaacgacctg
gatgccggcgacagcgacagcgacggcgaaaccgcgccggcgccgagccgcagtcagccg
gagttcgacttcgacgacgacgcagcgcccgccgaggccgccgaggccaagccgcagcaa
gcgccgcgtccgccgcgggagaagcgcgagccgcgccagccgcggcacgagcagaccgct
aacgccccgacgccggtcgtcgcagctgcaagcgtggtgccgcaggccgagagcgaggcc
ttgccggcgcagcaggccgcaccggtagccgcaaccgcagcgccgcagaccgaggatggc
actgcgcaagtgcaggccgcgccggtggccgcagccgcagcgatcgcaaccgcgccttcc
gttgccgaaacggcagcggtcgacgcggcaccggtcgccaccgcgcaggcggaaacggtg
gcgccggtagtggcagcaccgctgccgcccgtcgccgaggcgccagcggcgcgttccgag
gcagtgcctgccgcggagcctgctgcgtcgatcgtcaccgagtcggccgcttccgaagcg
gcaccgccggagaccatcgaggacgcgctgcagccgacaccggcgccgatcgtcgagcag
cccgtcccggtcgccacgaccaagcgcgacgccggaatggaaaccgttgcagcgtcggcc
gcgccgatcgaggagccggtcacggcatccacgacggacagcaagccgcaacaggacgcc
acgacgacgcagcaaccgctcgccgaagaagaagcgcccagcaagccggcctacgtgccg
gtgcagaccacgctgctggacgtcttccatgaagagcagccggccgctgcggtcgcaccg
acgccggtgcacacgccggtcgctgccgcgcctgtgtcggacagcgccgaaagccgccac
gtcggcgatgccgaaccggcacctgcagctgccgctgccgctggcaacggcctgttcgat
gcgccgcccgccgctccggcagacgctccggtcagcgtcgcccagcaccagccgcatgcc
agcaagtccggcgaaagcgaaagcgacgacaaggagcacaaggaccgcgccagctga
DBGET
integrated database retrieval system
