Xylocopilactobacillus apis: KIMC2_07980
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Entry
KIMC2_07980 CDS
T09716
Symbol
srmB_1
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xak
Xylocopilactobacillus apis
Pathway
xak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KIMC2_07980 (srmB_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xak03019
]
KIMC2_07980 (srmB_1)
03009 Ribosome biogenesis [BR:
xak03009
]
KIMC2_07980 (srmB_1)
Enzymes [BR:
xak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KIMC2_07980 (srmB_1)
Messenger RNA biogenesis [BR:
xak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KIMC2_07980 (srmB_1)
Ribosome biogenesis [BR:
xak03009
]
Prokaryotic type
rRNA helicases
KIMC2_07980 (srmB_1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF4931_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDR56236
UniProt:
A0AAU9DDK6
LinkDB
All DBs
Position
827986..829509
Genome browser
AA seq
507 aa
AA seq
DB search
MKFNELDLQPEVLKAIKDAGYVEMTPIQEQSLPLVLEKKDVLGQAQTGTGKTAAFGIPAI
QEASHEDHFISTLVMSPTRELAIQTRDELAKLGHDKKIRVMVVYGGADIGRQIKDLKNPP
QILVGTPGRLQDHINRKNVDFSHLKTLVLDEADEMLDMGFLEDISKIIRSLPKERQTLLF
SATMPQDIMQIGTAFMKNPVTIKVKSKELTADLIDQYYVKARDNEKFDFMTRLMDVQRPE
LALVFGRTKRRVDELTRGLKIRGFKAEGIHGDLTQQKRMNVLRMFKAGEIQILVATDVAA
RGLDIRGVTHVYNYDIPQDPDSYVHRIGRTGRAGRAGMSITFVNPREMDYLRGIERLTKV
KMIPLMPPTADKVQKELINYAMSQIESKSSSINVSKYKEEAEKLVSEIDPLILASLLLQS
YTKSSTKNRPVNISVERPLPLKKKSGNGHQRNNRGNSRHYNSRSSYHHDRDRDQKKFGHR
DYKKKTNTKKEPVQKKVNRNFVIRTNA
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaacgaactagatttacaaccagaagttttaaaagcaattaaagatgcagga
tatgttgaaatgacgcctattcaggagcagtcactgcctttagtcttagaaaaaaaagat
gtattgggccaggctcaaaccggaactggtaaaacagcagcttttggcattcctgctatt
caagaagccagtcatgaagaccactttatctcaacgttagtgatgtctccaactagagag
ttagcaattcaaactcgtgacgaattagctaaattagggcacgataaaaaaattagagtg
atggtagtttatggaggagcagatattggtcgtcagattaaagatctaaaaaatcctccg
cagattttagtaggtactccgggaaggctgcaagaccatattaatcgaaaaaacgttgat
ttttctcatttaaaaactttagtcttagatgaggctgatgaaatgcttgatatgggtttt
ttggaagatatttccaaaataatcagatctttgccgaaagaaaggcaaacattgctattt
tcagcaacaatgccgcaagatattatgcaaatcggaacggcatttatgaaaaatccggtg
accataaaggtaaaatcaaaagagttaacagcggatttaattgatcaatattatgtgaaa
gcccgtgataatgaaaagtttgattttatgacgcggttgatggatgttcagcgtccagaa
ttggctcttgtttttggaagaacaaaaagaagagttgatgaattaactcgtggattgaag
atcagaggttttaaagctgaaggaattcatggtgatttaacccaacaaaagaggatgaat
gtcttaagaatgttcaaggcgggagaaattcagattttggtggcgactgatgtcgctgct
cgaggtcttgatattcgaggagttactcatgtttataattacgatattcctcaagatcca
gatagttatgttcatcgaattggtagaacaggacgtgcgggacgtgcaggaatgtcaatc
acttttgttaacccgcgtgaaatggactatttaagaggaattgaacggttaacaaaagta
aaaatgattcctttgatgcctccaacagccgataaagttcaaaaagaattgattaattat
gcaatgtcacaaattgagtctaagtcatcatcaattaatgtcagcaaatataaagaagag
gctgaaaagctagttagtgaaattgatccattgattttagcaagtcttcttttacaaagt
tatacaaagagcagtactaagaatcgaccggtaaatatttctgtggaaaggccattaccg
cttaagaaaaaatcgggtaatgggcaccaaagaaataatcgaggaaattctcgtcactat
aattcaagaagctcgtatcatcatgaccgtgatcgtgatcaaaagaaatttggacatcga
gattataaaaagaagactaatactaaaaaagaaccagttcaaaaaaaagttaaccgtaat
tttgtaattcgtaccaatgcctaa
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