Xanthomonas albilineans: XALC_0113
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Entry
XALC_0113 CDS
T01160
Symbol
uvrD
Name
(GenBank) probable atp-dependent dna helicase protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
xal
Xanthomonas albilineans
Pathway
xal03420
Nucleotide excision repair
xal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XALC_0113 (uvrD)
03430 Mismatch repair
XALC_0113 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xal03400
]
XALC_0113 (uvrD)
Enzymes [BR:
xal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XALC_0113 (uvrD)
DNA repair and recombination proteins [BR:
xal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XALC_0113 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
XALC_0113 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
CBA14659
UniProt:
D2U8R1
LinkDB
All DBs
Position
144995..147196
Genome browser
AA seq
733 aa
AA seq
DB search
MDVSHLLDDLNPAQREAVSAPPGHYLVLAGAGSGKTRVLTHRIAWLHEVHGVPVHGMFAV
TFTNKAAGEMRHRADLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARLPESFQVLDADDQL
RLVKRVVQQLELDEGKFPPKQIAWWINQQKDEGRRAQHIQPEPHDVWINTLRNAYALYQE
RCDRAGLVDFAELLLRAHELLRDTPALLAYYRARFAEILVDEFQDTNAIQYAFVRVLAGD
SGRVFVVGDDDQAIYGWRGAKVENVQRFLKDFPGAQTIRLEQNYRSSANILNAANAVIAH
NPDRIGKQLWTDSGDGEPIDLYAAYNEVDEARYVLERARQWVRDGGSYSEAAVLYRSNAQ
SRAFEEALLAEQVPYRVYGGMRFFERAEIKDTLAYLRLVANRADDAAFERAVNTPARGIG
DRTLDEVRRLARVQSLSLWTAAQHAAQQGGELAARARNALGQFLGLIEQLVLEVADLSLP
EQIDHVLARSALRDHWSKESRSGLDSESRTDNLDELVSVASRFVRVDAEDDADEARQAMS
ELVAFLAYAALEAGEGQARADEDGVQLMTLHSAKGLEFPLVFLVGMEDGLFPSARSLEES
GRLEEERRLAYVGITRARHTLVLSYAESRRIHGQDNYNVPSRFLREIPRELLHEVRPKVQ
VSRSASLGAPRNPGHPRIEAPAIKLGANVQHPKFGGGVVIDYEGSGAHARVQVQFDEAGA
KWLVMAYANLTVR
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
gtggatgtctctcatttactcgacgatctgaaccccgcccagcgcgaggccgtctccgca
ccgcccggtcattatctggtcctggccggtgccggatccggcaagacgcgcgtgctcacc
catcgcatcgcctggctgcacgaggtgcatggtgtgccggtgcatggcatgttcgcggtt
accttcaccaacaaggcggccggcgagatgcgccatcgcgccgacctgcagttgcgcaac
ggcagccgcggcatgtggatcggcaccttccacggcctggcccaccgcctgttgcgcttg
cactggcaggacgcgcggttgccggagagcttccaggttctggatgccgacgaccaactg
cggctggtcaaacgcgtagtgcagcaactggagctggacgagggcaagttcccgcccaag
caaatcgcgtggtggatcaaccagcagaaggacgaaggccgccgcgcgcagcacatccag
cccgagccgcacgatgtctggatcaacaccctgcgcaacgcctatgcgctgtaccaggag
cgctgcgaccgcgccgggctggtcgacttcgccgagttgctgctgcgtgcgcacgagctg
ctgcgcgacacgccagcgttgctggcgtattaccgtgctcgcttcgctgagatcctggtc
gatgaatttcaggacaccaatgccatccagtacgcgttcgtgcgcgtgctcgccggcgac
agcggccgtgtattcgtggtcggcgacgacgaccaagccatttacggatggcgcggcgcc
aaggttgagaacgtgcagcgtttcctcaaggatttccctggcgcgcagaccatccgcttg
gagcagaactaccgttccagcgccaacattctcaacgccgccaacgcggtgatcgcgcac
aaccccgatcgcatcggtaagcaattgtggaccgattcgggcgatggcgagccgatcgat
ctgtatgcggcgtacaacgaagtcgacgaagcgcgctacgtgctcgagcgcgcgcgccaa
tgggtgcgcgatggcggcagctacagcgaagccgccgtgctctatcgcagcaacgcgcag
tcgcgtgcgttcgaagaggcgttgctcgccgagcaggtgccgtaccgcgtgtacggcggc
atgcgcttcttcgagcgtgccgaaatcaaagatacgctggcctatctgcgcctggtcgcc
aaccgcgccgacgatgcggcgttcgagcgtgcggtgaatacgccggcgcgcggcatcggc
gaccggaccctggacgaagtgcgacggctggcgcgtgtgcaatcgctgtcgctatggact
gccgcgcaacacgccgcgcagcagggtggcgaactggccgcgcgcgcgcgcaatgcgctg
ggccagttcctcggcctgatcgaacaactggtcttggaagtggccgacctgtcgctgccc
gagcagatcgatcatgtgctggcgcgctcggcgctgcgcgatcactggagcaaggaaagc
cgcagcggactggattcggagtcgcgcaccgacaacctcgacgaactggtttcggtggct
tcgcgcttcgtccgtgtcgacgccgaggatgatgctgacgaagcgcgccaggcgatgagc
gaattggtcgcgttcctggcctatgccgcattggaagccggcgaaggtcaagcccgggcc
gacgaggacggcgtgcaactgatgacgctgcattcggccaagggcctggaattcccgctg
gtgttcctggtcggcatggaagacggcctattccccagtgcgcgctcgttggaggaaagc
gggcgcctggaggaagagcggcgcctggcctatgtcggtatcacccgtgctcgccacaca
ttggtactcagctacgccgaatcgcggcgtatccacggccaggacaattacaacgttccg
tcgcgcttcctccgcgagatcccgcgcgagctattgcacgaggtgcgaccgaaggtgcag
gtctcgcgcagcgcttcgttaggtgcgccgcgcaacccggggcatcctcggatcgaggcg
ccggcgatcaagctcggcgccaatgtgcagcaccccaagttcggtggtggcgtggtcatc
gactacgaaggcagcggcgcgcacgcgcgcgtgcaagtgcagtttgacgaggccggcgcc
aagtggctggtgatggcctacgcgaatttgacggtgcgctga
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