Xanthomonas albilineans: XALC_0508
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Entry
XALC_0508 CDS
T01160
Symbol
rpoC
Name
(GenBank) probable dna-directed rna polymerase, subunit beta-prime protein
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xal
Xanthomonas albilineans
Pathway
xal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XALC_0508 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xal03021
]
XALC_0508 (rpoC)
03400 DNA repair and recombination proteins [BR:
xal03400
]
XALC_0508 (rpoC)
Enzymes [BR:
xal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XALC_0508 (rpoC)
Transcription machinery [BR:
xal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XALC_0508 (rpoC)
DNA repair and recombination proteins [BR:
xal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XALC_0508 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CBA15037
UniProt:
D2UBV1
LinkDB
All DBs
Position
559683..563900
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTALERRQLLTEEQYLTARQEHGDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFIESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPEIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHECGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEADVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANIAEVKRAYDNR
AVELHAKVKVRITETVIDENGGRSKKTSIVDTTIGRALLAEILPEGLPFALANTELTKKN
ISRLINSSYRQLGLKDSVVFADKLMYTGFAYATRAGVSIGIDDMLIPSEKKGILGEAEQE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTEKVVNAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEPDCGTTDGLTMTPIVEGGDVVEPLRDRVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEQWVAKLEEAGVQSVKVRSTITCESPFGVCARCY
GRDLARGHLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSIK
FNNLKSVEHANGSLVAVSRSGELSVLDGHGRERERYKLAYGATITAKDGDAVKAGQSVAN
WDPHNHPIVSEVAGFIRFIDFIDGVTVIEKTDELTGLASREITDPKRRGTQAKDLRPIVR
IVDAKGNDLAIPGTDLPAQYLLPPRSIVNLQDGAPVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDADGSEHEELIPKYRNITVFE
GEHVAKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEITDQGNSKFLNGEQAERQRVIEENSRLAARNELQAKYEPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTSDTLRGLKENVIVGRLIPAGTGLAYHSLRRRNSSGLTESE
MQTLSGGSAESTVETATSAAASSDD
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatctgctcaacctcttcaaccagcagcgccagacgctggacttcgacgcgatc
aagatcgcgctggcctcgccggacctgatccgctcgtggtccttcggcgaagtgaagaag
ccggaaaccatcaactatcgcaccttcaaacctgagcgcgacggcctgttctgcgcggcc
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgaaaaatgcggcaccgaagtcaccttggccaaggtgcgccgcgag
cgcatgggacatatcgatttggcctcgccggtcgcgcacatctggttcctgaagtcgttg
ccgtcgcgtatcggcttgatgctggatatgaccttgcgcgacatcgagcgcgtcctgtat
ttcgaagcctatgtggtgaccgagccgggcctgaccgcgctggagcgccgccaactgctg
accgaagagcagtacctgactgcccgccaggaacatggcgacgacttcgatgccgccatg
ggcgccgaggcggtgtacgagctgttgcgcaccatcgatctgcagtcggaaatgacgcgc
ctgcgcgaagaaattgccagcaccggttctgaaaccaagctcaagcgtctgaccaagcgc
atcaagctgatcgaggcgttcatcgagtctggcaaccgtccggagtggatggtgatgacc
gtgctgccggtgctgccgccggatctgcgcccgctggtgccgttggacggtggccgcttc
gcgacctccgacctgaacgatctgtaccgccgcgtcatcaaccgcaataaccgtctgcgc
cgcctgctcgaactcaatgcgccggagatcatcgtgcgcaacgaaaagcgcatgttgcag
gaatcggtcgatgcgctgctggataatggtcgccgcggtcgtgccatcaccggcaccaac
aagcgcccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgccag
aacctgctcggcaagcgcgtggactactccggtcgttcggtcatcgtggtcggcccgacc
ctgcgtctgcacgagtgcggcctgccgaagaagatggcgctggagctgttcaagccgttc
gtgttcgccaagctgcagcgccgtggtctggccaccaccatcaaggccgccaagaagctg
gtcgaacgcgaagaagccgatgtctgggacatcttggaagaagtgatccgcgagcatccg
gtgctgttgaaccgtgcgccgaccctgcaccgcttgggcatccaggcgtttgagccggta
ctgatcgaaggtaaggcgatccagttgcatccgctggtctgtactgccttcaacgccgac
ttcgacggcgaccagatggctgtgcacgtgccgttgtcgctggaagcgcagttggaagcg
cgtgcgttgatgatgtccaccaacaacatcctgtcgcctgccaacggcgagccgatcatc
gtgccgtcccaggacgtggtgctgggtctgtactacatgagccgtgcgttggagaacaag
aaaggcgagggcatggtgttcgccaacatcgccgaagtgaagcgcgcttacgacaaccgt
gcggtggaattgcacgccaaggtcaaggtccgtatcaccgagacggtgatcgacgagaac
ggcggccgtagcaagaagacctcgatcgtggacaccacgatcggtcgcgcgctgttggcc
gaaatcctgccggaaggcctgcccttcgcgctggccaataccgagctgaccaagaagaac
atcagtcgcctgatcaactccagctaccgtcagttgggtctgaaggacagcgtggtgttc
gccgataaactgatgtacaccggcttcgcctatgccacgcgcgccggcgtgtcgatcggt
atcgacgacatgctgattccgtcggaaaagaagggcatcctcggcgaggccgaacaggaa
gtgctggaaatccaggagcagtatcagtccggtctggtcaccgctggtgagcgctacaac
aaggttgtggacatctggtcgcgcaccaacgagcgtatcgccaaggcgatgatggacacc
atcggcaccgagaaggtggtcaacgccaagggggagaccatcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggcgcgcgcggtagccaggcgcagatccgtcagttg
gctggtatgcgtggtttgatggcgcgtccggacggctcgatcatcgagacgccgatcaag
gcgaacttccgcgaaggtttgaacgtgcaggagtacttcaactccacccacggtgcgcgt
aagggtctggccgataccgcgttgaagaccgccaactccggttacctgacccgccgtctg
gtcgatgtggcgcaggacgtggtgatcaccgagcccgattgcggcaccaccgatggcctg
accatgaccccgatcgtggaaggcggcgatgtggtcgagccgctgcgcgaccgcgtgctc
ggccgtgtggtggccgaggacgtgttcctgccgggcaacgacgaggatccgatcgtcacc
cgcaacaccttgctcgacgagcagtgggtggccaagttggaagaggctggcgtgcaatcg
gtcaaggtccgctcgaccatcacctgcgaatcgcccttcggcgtgtgcgcgcgttgctac
ggtcgcgacctggcccgtggtcacctggtcaatatcggcgaagcggttggcgtcatcgcc
gcgcagtcgatcggcgagcccggcacccagttgaccatgcgtaccttccacatcggcggc
gcggcctcgcgtgcggcggcggtggacaacatcacggtcaagaccaccggttcgatcaag
ttcaacaacctcaagtcggtcgagcacgccaatggctcgctggtggcggtgtcgcgttcc
ggcgaactgtcggtgctcgacggccacggtcgcgagcgcgagcgctacaagctggcgtat
ggcgccaccatcaccgccaaggatggtgatgcggtcaaagcgggtcagtcagtggcgaac
tgggatccccacaaccacccgatcgtctcggaagtggccggtttcattcgtttcatcgat
ttcatcgacggcgtcaccgtcatcgaaaagaccgatgagctgacgggtttggcctcgcgg
gagatcaccgatcccaagcgccgtggtacccaggccaaggacctgcgcccaatcgtgcgc
atcgtcgacgccaagggcaacgacctggccatcccgggcaccgatctgccggcgcagtac
ctgctgccgccgcgctcgatcgtcaacctgcaagacggtgcgccggtcggcgtgggcgat
gtggttgccaagatcccgcaggaagcctccaagacccgcgacatcaccggtggtctgccg
cgcgtggccgacctgttcgaagcgcgtaagccgaaggatccggcgatcctggccgagcgt
tcgggcatcatcagcttcggtaaggacaccaagggcaagcagcgcttgatcatcaaggac
gccgacgggtccgagcacgaagaactgatcccgaagtaccgcaatatcaccgtgttcgaa
ggcgagcacgtggccaagggcgaaaccgtggtagacggcgagccgagcccgcaggacatc
ctgcgcctgctgggtgtcgagccgctggctgcgtacctggtcaaggaaatccaagacgtg
taccgcctgcagggcgtgaagattaacgataagcatatcgaggtcatcacccggcagatg
ctgcgcaaggtcgagatcaccgaccagggcaacagcaagttcctcaatggcgagcaggcc
gagcgccagcgcgtcatcgaggaaaattcccgcctggccgcgcgcaacgagttgcaggcc
aagtacgagccggtgttgctgggcatcaccaaggcgtcgctggcaaccgagtctttcatt
tcggcggcctcgttccaggaaaccacccgtgtcctcaccgaggcggcggtgcgtggcacc
agcgatacgctgcgcggtctgaaggagaacgtgatcgtggggcggttgatcccggcgggt
accggtttggcataccacagcctgcgtcgccgcaactccagtggcctgaccgagtcggag
atgcagaccctgtctggcggcagcgccgagtcgacggtcgagactgccacgtcagcagct
gccagcagcgacgattga
DBGET
integrated database retrieval system
