Xanthomonas albilineans: XALC_1020
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Entry
XALC_1020 CDS
T01160
Symbol
pnp
Name
(GenBank) probable polynucleotide phosphorylase protein
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xal
Xanthomonas albilineans
Pathway
xal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XALC_1020 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xal03019
]
XALC_1020 (pnp)
03016 Transfer RNA biogenesis [BR:
xal03016
]
XALC_1020 (pnp)
Enzymes [BR:
xal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
XALC_1020 (pnp)
Messenger RNA biogenesis [BR:
xal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
XALC_1020 (pnp)
Transfer RNA biogenesis [BR:
xal03016
]
Prokaryotic type
tRNA degradation factors
XALC_1020 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
DUF7680
KH_KhpA-B
KH_PNO1_2nd
S1_2
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
CBA15535
UniProt:
D2UCR6
LinkDB
All DBs
Position
1147983..1150091
Genome browser
AA seq
702 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEIARQAGGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMN
PDIDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTVSDLKDSQLELVVAG
TSNAVLMVESEAALLSEDVMLGAVTFGHREMQKVINAINELTAEAGTKPSDWVAPAKNAA
MIVALKEAVGGQLAAAFQVRDKLQRRDAIAAIKKDVLAQLAPRATAENWVAADLAKEFGE
LEYQTMRGSVLSTKVRIDGRALDTVRPISVKAGVLPRTHGSALFTRGETQAIVVTTLGTA
RDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTME
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGNDFVVLS
DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALAQAKAGRLHILGEMAS
ALTSPRAELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS
VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVGDKLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGEGVSAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcaccctcgaaaccggc
gagatcgcccgccaggctggcggtgccgtcatcgtcaagatggacgacaccgtactgctg
gtcaccgccgtcgccgccaagagcgcgcgcgaaggtcaggacttcttcccgctgacggtc
gactatcaggagaagttctacgccggcggccgcatccccggtggcttcttcaagcgcgag
ggccgtgcgaccgagaaggagacgctgatttcgcgtttgatcgaccgtccgatccggccg
ctgttcccggaagactacaaaaacgaagtacagatcatcgccacggtgatgtcgatgaac
ccggacatcgatggcgacattgccgcgctgatcggtgcgtcggctgcgttgtcgctcgcg
ggtaccccgttcaatgggccgatcggcgccgccaaggtcggctacaagaatggcgaatac
attctcaacccgacggtgtcggacctgaaggactcgcaactcgaactggtcgtggccggt
accagcaacgcggtgttgatggtcgagtccgaggccgcgctgctgtcggaagacgtgatg
ctgggtgcggtcaccttcggccaccgcgagatgcagaaggtcatcaacgcgatcaacgaa
ctgaccgccgaagccggcaccaagccgtccgattgggtcgccccggccaagaacgcggcc
atgatcgtcgcgctgaaggaggctgtcggcggtcaactggccgcggcgttccaggtgcgc
gacaagctgcagcgtcgcgatgcgattgccgcgatcaagaaggacgtgctggcgcagttg
gcgccgcgcgccaccgccgagaactgggtcgctgccgacctggccaaggaattcggtgag
ctggaataccagaccatgcgcggttcggtactgagcacaaaggtgcgtatcgatggtcgt
gcgctggacaccgtgcgtccgatcagcgtgaaagccggcgtgttgccgcgcacccatgga
tcggcgctgttcacccgcggcgagacgcaggcgatcgtggtcaccacgctgggcaccgcc
cgcgacggtcaggtgatcgatgcggtctccggcgaatacaaggaaaacttcctgttccat
tacaacttccccccgtactcggtgggcgagtgcggccgcttcggtgcgcccaagcgtcgc
gaaatcggccacggccgtctcgccaagcgcggcgtgctggcggtgatgccgaccatggaa
gagtttccgtacaccattcgcgtggtttcggaaatcaccgaatccaacggttcctcgtcg
atggcctcggtgtgcggcagctcgctggcgctgatggacgccggtgtgccggtgaaggcg
ccggtagccggtatcgccatgggcttggtcaaggaaggcaacgactttgttgtgctgtcg
gacatcctgggcgatgaagatcacctgggcgacatggacttcaaggtcgccggtactgcc
gaaggcgtgtccgcgttgcagatggacatcaagatcgaaggcatcaccgaggagatcatg
aaacaggccctggcgcaggccaaggcgggtcgcctgcatattctcggcgagatggccagc
gcgctgaccagcccgcgtgcggaactgagcgactacgcgccgcgcctgctgacgatcaag
atccatcctgacaagatccgcgaagtgatcggcaagggcggttcgaccatccaggcgatc
accaaggaaaccggcacccagatcgatattcaggatgacggcaccatcgtcatcgcctcg
gtcaacgcgatcgccgcgcaggccgccaaggcccgcatcgagcagatcacctcggacgtg
gagccgggccggatctacgaaggcaaggtcgccaagatcatggatttcggcgcattcgtc
accatcctgccgggcaaggatggcctggtccacgtttcgcagatctccagcgagcgcgtg
gagaaggtcggcgacaagctgaaggaaggcgacgtggtcaaggtcaaggtgctggaagtc
gacaagcagggccgtattcgcctgtcgatgaaggcggttgaggaaggcgagggcgtgtcg
gccgagtaa
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integrated database retrieval system
