Xanthomonas albilineans: XALC_1348
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Entry
XALC_1348 CDS
T01160
Symbol
rpfB
Name
(GenBank) probable regulation of pathogenicity factor rpfb protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
xal
Xanthomonas albilineans
Pathway
xal00061
Fatty acid biosynthesis
xal00071
Fatty acid degradation
xal01100
Metabolic pathways
xal01212
Fatty acid metabolism
xal02024
Quorum sensing
xal04146
Peroxisome
Module
xal_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
xal00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
XALC_1348 (rpfB)
00071 Fatty acid degradation
XALC_1348 (rpfB)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
XALC_1348 (rpfB)
09145 Cellular community - prokaryotes
02024 Quorum sensing
XALC_1348 (rpfB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
xal01004
]
XALC_1348 (rpfB)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xal04147
]
XALC_1348 (rpfB)
Enzymes [BR:
xal01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
XALC_1348 (rpfB)
Lipid biosynthesis proteins [BR:
xal01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
XALC_1348 (rpfB)
Exosome [BR:
xal04147
]
Exosomal proteins
Exosomal proteins of breast milk
XALC_1348 (rpfB)
Exosomal proteins of breast cancer cells
XALC_1348 (rpfB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
DUF4235
Motif
Other DBs
NCBI-ProteinID:
CBA15855
UniProt:
D2UA81
LinkDB
All DBs
Position
complement(1560320..1562002)
Genome browser
AA seq
560 aa
AA seq
DB search
MNLDRPWLQSYPPGVDATIDVEAYRSVAEVFETAVAKFSDRPAYSNFGTTLTYREIGALS
RQFAAYLLGELHLKKGDRVALMMPNCLQYPIATFGVLLAGMTVVNVNPLYTTRELRHQLI
DSGASAIMVVDNFCKTVEDALAGTPIKQVITTGMGDMLGFPKGALFNFVLRYVKKLVPDY
TISNAIRFREALALGRKHTLSKQDIAPEDIAFLQYTGGTTGIAKGAMLTHRNLVANMLQA
GHWITVTGKLEEGKEVIITALPMYHIFALTANGLIFVKIGGLNHLISNPRDMPGFIKELK
RFPFTAFTGVNTLFNGLLNTPGFAQLDFSSLKCTLGGGMAVQRAVAEHWKRVTGLTLVEA
YGLTETSPGACMNPLTLDEYNGSIGLPIPSTDVCIKDDHGQIMATGEIGELCIRGPQVMK
GYWRRPEETAHAIDADGWFRTGDIARMDAQGFFYIVDRKKDMILVSGFNVYPNEIEEVIA
MMPGVLEVAAVGVPDEKSGEAVKVVIVKKDPNLTAEEVKAHARANLTGYKQPRIVEFRKE
LPKTNVGKILRRELRDAQMH
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggatcgtccctggttgcagagttacccgcctggcgttgacgccacgatcgac
gtcgaagcgtaccgctcggtcgccgaggtgttcgaaaccgccgtcgccaagttcagtgat
cgccccgcctattccaacttcggcacgacgttgacctaccgcgagatcggcgcactgtcc
cggcaattcgccgcctatctgctgggcgaactgcaccttaaaaagggtgatcgggtcgcg
ctgatgatgccgaactgtctgcaatacccgattgccaccttcggcgtgctgctggccggc
atgaccgtggtcaacgtcaatccgctgtacaccacacgcgaactgcgtcatcaactgatc
gactccggcgccagtgcgatcatggtggtggacaatttctgcaagaccgtggaagacgcg
ctggccggcacgccaatcaaacaggtcatcaccaccgggatgggcgacatgctcggtttt
cccaagggagcgctattcaacttcgtcctgcgctacgtcaagaagctggtgcccgactac
acgatcagcaacgcgattcggttccgggaagcactcgcactcggccgcaagcatacgctg
tcgaagcaggatatcgcaccagaggacatcgcattcctgcagtacaccggcggtaccacc
ggcatcgccaagggcgcgatgctgacccatcgcaacctggtggcgaacatgctgcaggcc
ggccattggatcaccgtgaccggcaagctggaagaaggcaaggaagtcatcatcaccgca
ctgccgatgtaccacatcttcgcattgaccgcgaacgggctgatcttcgtaaagatcggc
ggactcaatcatctgatcagcaacccccgcgacatgcccggcttcatcaaggaattgaag
cgattccccttcaccgcgttcaccggggtcaataccctgttcaacggactgctcaacacg
cccggcttcgcgcagttggatttttcctcgctgaaatgcacattgggcggcggcatggcg
gtacaacgcgccgtcgccgaacactggaagcgggtcaccggcctcactctggtggaagcc
tacggactcaccgaaacctcgccgggcgcttgcatgaatccattgacgcttgacgaatac
aacggctcgatcgggctaccgatcccctcgaccgatgtgtgcatcaaagacgaccacggg
cagatcatggcaaccggcgaaatcggcgagttgtgcatccgtggtccacaggtaatgaag
ggttactggcgccgccccgaggaaaccgcgcacgcgatcgacgccgacggctggttccgg
accggcgacattgcgcggatggacgcgcaggggttcttctatatcgtcgatcgcaagaag
gacatgatcctagtttcaggtttcaacgtatacccgaacgagatcgaggaagtcatcgcg
atgatgccaggcgtattggaagtggccgcggtcggtgtaccggacgaaaaatccggcgag
gcggtaaaagtggtaatcgtcaaaaaagacccgaacctgaccgccgaagaggtgaaggca
cacgcccgtgccaacctgacaggctacaagcagccgcgcatcgtcgaattccgcaaggaa
ttgcccaagaccaacgtcggcaagatcctgcgacgggagttgcgcgacgcgcaaatgcat
taa
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