Xanthomonas albilineans: XALC_2040
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Entry
XALC_2040 CDS
T01160
Symbol
dnaE
Name
(GenBank) probable dna polymerase III, alpha chain protein
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xal
Xanthomonas albilineans
Pathway
xal03030
DNA replication
xal03430
Mismatch repair
xal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XALC_2040 (dnaE)
03430 Mismatch repair
XALC_2040 (dnaE)
03440 Homologous recombination
XALC_2040 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xal03032
]
XALC_2040 (dnaE)
03400 DNA repair and recombination proteins [BR:
xal03400
]
XALC_2040 (dnaE)
Enzymes [BR:
xal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XALC_2040 (dnaE)
DNA replication proteins [BR:
xal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
XALC_2040 (dnaE)
DNA repair and recombination proteins [BR:
xal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
XALC_2040 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CBA16524
UniProt:
D2UEG2
LinkDB
All DBs
Position
2401905..2405501
Genome browser
AA seq
1198 aa
AA seq
DB search
MSTSRFAHLHIHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADLLIADGSQAPWRLTVLCRNRDGYLSLSRLLTRAWLEG
HRSEGGVALRPEWLQSGSDNLFALAGRNSLAGRLASEGRHDLAEQQLADWQRIFGDGLHL
ELTRTGRDGEEAFNQFALHAAGMRGLPVVASNDVRFLYASDFAAHEARVCISSGRVLDDP
KRPREYSDQQYLKSAEEMAALFADIPDALDNTLALAQRCNLQMQLGTYFLPAYPVPDDET
LDSWIRSQSRDGLAARLEKHPLAPGKTRQDYVERLEFELDTIIKMGFPGYFLIVADFIQW
GKQQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRDRVSQIITYGTMAAKAVVRDCGRVLGFPYGLVDGVAKLIPNILGIT
LKDAMGEGKDSEMAAPELIQRYQSEEDVRDLIDLARQLEDLTRNAGKHAGGVVIAPTPLS
DFCPLFAEHDVDHLGKNPVTQFDKDDVEQVGLVKFDFLGLRTLTIIDWAVKAINVRHARA
GIPAVEITAIPLDDVPTYKDIFASGSTGAVFQFESSGMRRLLKDAKPDRFEDLIALVSLY
RPGPMDLIPDFNARKHGQQAILYPDPRTEAILKDTYGIMVYQEQVMQMAQIVGGYSLGGA
DLLRRAMGKKVPAEMAKHREIFREGAAKGGVGEAKADEIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLGLTVRPPRINASAYMFEA
ATPDTIQYGLGAIKGVGRGACEAIVAERERGGAYISLMDFCTRVESAKLNKRTLEALIHA
GAMDGLDSNRATLMLQLPEVMKATEQMARERASGQNSLFGNADTSAPALHLNLPESKEWP
LGQLLAGERETLGFYLSGHPFDPYREEVRELVGCDLGALEKICAQSNGGRGRSGEGDGEK
RAWRPEVSAILAGLVVGVRRKGDSQVFVQLEDGRGRIECSAFSDALAEFGHLLTRDRLLI
VKGGVREDEFNGGYAMRIRQCWDYEQICTHHAQRLSLRLDLRQRSAWPRIDGLLARHRPG
KTPLRLDLLLQSAQGSVAGMLDLNGNHSVRVDPHLLDALRGDPAVRAVKVKYTPPWAN
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgtccacttcccgtttcgctcacctgcacatccacaccgagttctcgctggcggattcg
accatccgtgtgcccgagaaaccggatcaggccgacccgaagaaagccaagcaagccaat
ctgctcagccgcgcggtggaactcgatctgcctgcgctggcggtcaccgatctcaacaac
ctgttcgcgctggtcaagttctacaaagccgccgagggcgtgggcatcaagccgatcgcc
ggcgccgacctgctgatcgccgacggcagccaggcgccatggcggctgaccgtgctgtgt
cgcaaccgcgacggctacctgagcctgtcgcgactactgacccgtgcctggctggaaggc
catcgcagcgaaggtggcgtggcactgcgcccagaatggctgcaaagcggcagcgataac
ctgttcgcgctagccgggcgcaacagcctggccgggcgcctggccagcgaaggtcgccac
gatctggccgaacagcaactggccgactggcaacgcatcttcggcgacggcctgcacttg
gaactgacccgcaccggccgcgatggcgaggaagcgttcaaccagttcgccctgcatgcc
gccggcatgcgcggcctgcccgtggtggccagcaacgacgtgcgcttcctgtacgccagc
gatttcgccgcgcacgaagcgcgcgtgtgcatctcctccggccgcgtgctcgacgacccc
aagcgtccacgcgagtacagcgatcagcagtacctcaaatcggccgaggagatggccgcg
ttgttcgccgacattcccgacgcgctcgacaacaccctggcactggcgcaacgctgcaac
ctccagatgcagttgggcacctacttcctgcccgcctacccggtgcccgacgacgagacc
ctggacagctggatccgcagccaatcccgcgacggcctggccgcacgcctggagaaacat
ccactggcccccggcaagacccgccaggactacgtggagcggctcgaattcgagttggac
accatcatcaagatgggctttcccggctacttcctgatcgtggccgacttcatccaatgg
ggcaagcagcagggtattccgatcggcccgggccgcggttccggcgccggttcgctggtg
gcctgggcgttgcagatcaccgacctggacccactgccgtacaacctgctgttcgagcgc
ttcctcaaccccgaacgcgtgtcgatgcccgacttcgacatcgacttctgcatggaccgc
cgcgacgaggtaatcgactacgtggcgcgcaaatatgggcgcgaccgggtcagccagatc
atcacctacggcaccatggcggcgaaggcggtggtgcgcgactgcggccgcgtgctcggc
ttcccttatggtctggtcgatggggtggccaagctgatccccaacatcctcggcatcacc
ctcaaggatgcgatgggcgaaggcaaggacagcgaaatggccgcgccggaattgatccag
cgctaccagagcgaggaagacgtccgcgacctgatcgatctggcgcgacaactcgaagac
ctcacccgcaacgccggcaagcatgccggcggcgtggtgatcgcaccgacaccgctgtcg
gacttctgcccgctgttcgccgaacacgacgtcgatcacctgggcaagaatcccgtcacc
cagttcgacaaggacgatgtcgagcaggtcggcctggtcaagttcgacttcctcggcctg
cgcacgctgaccatcatcgactgggcggtgaaagcgatcaacgtgcgccacgcacgcgcc
ggcatcccggcggtggagatcaccgcgattccgctcgacgatgtgccgacctacaaagac
atcttcgcctcgggcagcaccggcgcggtgttccagttcgaatcctcgggcatgcgccgc
ctgctcaaggacgctaagccggaccgcttcgaggatctgatcgcgctggtatcgctgtac
cgccccggcccgatggacctgatcccggatttcaacgcgcgcaaacacggccagcaggcg
atcctttaccccgatccacgcaccgaagccatcctgaaagacacctacggcatcatggtg
taccaggagcaggtcatgcaaatggcgcagatcgtcggcggctactcgctgggtggcgcg
gacctgctacgccgcgcgatgggcaagaaggtgccggccgagatggccaaacatcgcgaa
atcttccgcgaaggcgcggccaagggcggtgtcggcgaggccaaggccgacgaaatcttc
gacctgatggagaaattcgccggctacggtttcaacaaatcgcacgccgccgcctacgca
ctggtcagctatcagaccgcttggctgaaacgccactatccagccgaattcatggccgcg
accctgtcctcggacatggacaacaccgacaaggtcgtgggcttcctcgacgaagtccgc
aacctcggactgaccgtgcggcccccgcggatcaacgcctcggcctacatgttcgaagcg
gccacacccgacaccatccagtacggcctgggcgcgatcaagggcgtgggtcgcggcgcc
tgcgaggcgatcgtggccgaacgcgagcgcggcggcgcctacatctcgctgatggatttc
tgcacacgtgtggaatcggccaagctcaacaagcgcacgctggaagcactgatccacgca
ggcgcgatggacgggctggacagcaaccgcgccacgctgatgctgcaactgccggaggtg
atgaaggccaccgagcagatggcgcgcgagcgcgcctccgggcagaactcactgttcggc
aacgccgacaccagcgcaccggcgctgcacttgaacctgccggaaagcaaggaatggccg
ctcggccagttgctggccggcgagcgcgagacgctcggcttttacctcagcgggcatccg
ttcgatccgtaccgcgaggaagtccgcgaactggtcggctgcgacctcggagcactggaa
aaaatctgcgcgcaatccaacggtggacgcggacgcagtggcgagggcgatggcgaaaag
cgcgcttggcgtccggaagtcagcgcaattctggccggcctggtggtcggcgtgcgccgc
aagggcgacagccaggtgttcgtgcaactggaggacggccgcggtcgcatcgaatgcagc
gcgttctccgatgccctcgccgagttcggccacctgctcacccgcgaccgtctgctgatc
gtcaagggcggcgtgcgcgaggacgaattcaacggcggctatgccatgcgcatccgccaa
tgctgggactacgaacaaatctgcacccaccacgcgcagcggctgtccttgcggctggat
ttgcgccaacgcagcgcctggccgcgcatcgacggcttgctcgcccgccaccgcccgggc
aagacgccactgcgtctggacctgttactgcaatccgcgcaaggcagcgtggccggcatg
ctcgacctcaacggcaatcattcggtgcgcgtggatccgcacctgctggacgcgctgcgc
ggcgatccggcggtgcgcgcggtgaaagtcaaatacacgccgccgtgggcgaactga
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integrated database retrieval system
