Xanthomonas albilineans: XALC_2720
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Entry
XALC_2720 CDS
T01160
Symbol
rhlE
Name
(GenBank) probable atp-dependent rna helicase protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xal
Xanthomonas albilineans
Pathway
xal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XALC_2720 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xal03019
]
XALC_2720 (rhlE)
Enzymes [BR:
xal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XALC_2720 (rhlE)
Messenger RNA biogenesis [BR:
xal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XALC_2720 (rhlE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
CBA17197
UniProt:
D2UFN6
LinkDB
All DBs
Position
3222323..3223693
Genome browser
AA seq
456 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTPIQSQAIPVALQGHDLMAGAQTGTGKTAAFGLPLL
QHLGTSAQTVGSGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSATIYGGVGMGNQL
DALRRGVDLLIACPGRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILTKLPK
QNRQTLLFSATFEEGIKQLAREFMHNPQEIQATPSNTVADTITHRVHPVDGARKRELLLH
LLAADSRKQTLVFARTKHGADKLTTFLDKSGIKAAAIHGNKSQGQRLRALGDFKASRITV
LVATDIAARGIDIDQLPQVINYDLPMVAEDYVHRIGRTGRNGAQGEAVSLVAQDEAKLLR
AIARLLKRDMDIRDVPGFEPATPIRWGNNNPPDERPGGNRPPRRGSHARRGHGDAPSHAH
AGSKKPGGHHADGARRQGQGRRQGNGGNRPPSNAPH
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgaatccctgggccttgcgcccttcctgctgcgtgcgctggccgagcagggc
tatgaaacccccaccccgatccagtcgcaggcgattcctgtggcactgcagggccacgac
ctgatggccggcgcgcaaaccggcaccggcaaaaccgccgcgttcggcctgccgctgctg
caacacctgggcacctcggcgcagacggtgggctcgggcccgcgcaagccacgcgcactg
atcctgaccccgacccgcgaactggccacccaggttcacgacagcctgcgcggctacagc
aagtatctgcgcattcccagcgccaccatctacggtggcgtgggcatgggcaaccagctc
gacgcgctgcgccggggcgtagatctgctgatcgcctgcccggggcgcctgctcgaccat
ctcgagcgccgcagcgtggacctgtccggcatcgagatcctggttctggacgaggccgac
cgcatgctcgacatgggcttcctgccgtcgatcaaacgcatcctgaccaagctgcccaag
caaaaccggcagaccctgttgttctcggccaccttcgaggaaggcatcaagcagttggcc
cgcgagttcatgcacaacccgcaggaaatccaggccactccgagcaacaccgtcgccgac
accatcacccaccgcgtacacccagtcgatggcgcgcgcaagcgcgaactgctgctgcac
ctgctggcggccgactcgcgcaagcagacgctggtgttcgcacgcaccaagcatggcgcc
gacaagctgaccacgttcctggacaagtccggaatcaaggccgcggcgatccacggcaac
aagagccagggccagcgtctgcgcgcgctgggtgacttcaaggccagccggatcaccgtc
ctggtggcgaccgacatcgccgcgcgcggcatcgacatcgaccagttgccgcaagtcatc
aactacgacctgccgatggtcgccgaggactacgtgcaccgcatcggccgtaccggccgc
aacggcgcccaaggcgaggcagtctcgctggtggcgcaggacgaagccaagctgctgcgc
gcgatcgcgcgcctgctcaagcgcgatatggacattcgcgacgtgccgggtttcgagcca
gccacaccgatccgctggggcaacaacaacccaccggacgagcgtccgggcggcaaccgt
ccaccgcgccgcggcagccatgcacgacgcggacacggtgatgcgccgtcgcacgcccac
gcgggcagcaagaagcccggcggccaccacgccgacggtgcccgccgccagggtcaggga
cgccgccagggcaatggcggcaaccgcccgcccagcaacgctccgcactga
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