Xanthomonas albilineans: XALC_3012
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Entry
XALC_3012 CDS
T01160
Symbol
hrpB
Name
(GenBank) probable atp-dependent rna helicase protein
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
xal
Xanthomonas albilineans
Brite
KEGG Orthology (KO) [BR:
xal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xal03019
]
XALC_3012 (hrpB)
Enzymes [BR:
xal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
XALC_3012 (hrpB)
Messenger RNA biogenesis [BR:
xal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
XALC_3012 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
CBA17489
UniProt:
D2UGH8
LinkDB
All DBs
Position
3560149..3562809
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AA seq
886 aa
AA seq
DB search
MYGARPTLPLYSGAPAPYPWPMTSAVFPIDPLLPQIRDSLAAHPRLVLEAPPGAGKTTQV
PPALLDAPWLQGRRIVMLEPRRVAARSAATFMARQRGEAPGETVGYRIRFENKVSARTRI
EVVTEGILTRMLQDDPLLDGVGALLFDEFHERHLAADLGLALALDVQAQVREDLRIVVMS
ATLDGERLAQFLDAPRLSSAGRSFPVEIAHFPARREESLEVQTRRAIDHALQQHPGDVLV
FLPGQREIARVKAALEAGGIATGSSADAIVTHPAAAPSAHDAVHTALHMGATHGVDVLPL
HGELPVEQQSKVLQADPHGRRRVVLATNVAESSVTLPGVRVVIDAGLAREPHYDPNSGFS
RLDVTTITQASADQRAGRAGRVASGWAYRLWPQSQRLEAQRRAEILQVELASLALELAAW
GSDGVRFVDPPPAGALAAARELLQRLGALDANQIITAHGRRMLALGTHPRLAAMLLAATD
ARAQALACDLAALIEARDPLRQGGDALAARWRALAAFRRGRVPHDAHRDGLAAIDAAATQ
WRRRLRGKAVAPESVDAHVLGDLLAHAFPDRIGVRHPHDPLRYLLANGRSARLFEHSELR
GEPWLVATELRHEAKDALLLRAAPVDETSLRAQFPQRFVQQDVVRWDAERRALSALRESR
FDRIVLDSRPAGRVDPAHAATALTEAVRELGLQVLPWSEDLRQWRARVAGLRAWMPELDL
PDLSDTALLDSLEDWLRPAFVGKTRLDALGEDALAEALKTRLPWDRRQAIDRHAPTRIAV
PSGMERRIDYALDHAGQPQPPVLAVKLQELFGLADTPRIADSRVPLVLHLLSPGGRPLQV
TQDLRNFWSNTYPEVKKEMKGRYPRHPWPDDPWTATASHRAKPRGT
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
ttgtacggggccaggccgacactgccgctctacagcggcgcgcctgccccgtatccttgg
ccgatgacgtccgccgtgtttccgatcgatccactactgccgcagatccgcgacagtctc
gccgcccacccgcgcctggtgctggaagccccgcccggcgccggcaagaccactcaggtg
ccaccggcattgctggacgcgccatggctacagggccgtcgcatcgtgatgctggaaccg
cgccgagtcgccgcgcgcagcgccgccacgttcatggcccgacagcgcggcgaggctccg
ggcgagacggtgggctaccgcatccgcttcgagaacaaggtctccgcgcgcacccgcatc
gaggtcgtcaccgagggcatcctgacccgcatgctgcaagacgatccgctgctcgatggc
gtcggtgcactgctgttcgacgagttccacgagcgccacctggccgcggaccttggcctg
gcgctggcgctggacgtgcaggcgcaagtgcgcgaggacctgcgcatcgtggtgatgtcg
gcgacgctggacggcgagcgcctggcgcagttcctcgatgcaccacggctgtccagcgcc
ggacgcagctttccggtggagattgcgcatttcccggcacggcgcgaggaatcgctggaa
gtacaaacgcgccgcgccatcgaccacgcgctgcaacagcatcccggcgatgtgctggtg
ttcctgcccgggcaacgcgagatcgcgcgagtaaaagcggcactggaagcaggcgggatt
gcgacgggcagcagcgcagatgccatcgtgacgcatccggcggcggccccgtcagcacac
gatgctgtacacactgcgctccacatgggagcaactcacggcgtggacgtgttgcccttg
cacggcgagttaccggtcgagcagcaaagcaaggtcctgcaagccgatccgcatggccgg
cgacgcgtggtgctggcgaccaacgtggccgaatcgtcggtcaccctgcccggcgtgcgc
gtggtgatcgacgcggggctggcacgcgaaccgcattacgatccgaacagcggtttctcg
cgtctggacgtgaccaccatcacgcaggcttccgccgaccagcgcgctggccgtgccggt
cgcgttgccagcggctgggcgtatcggctatggccgcaatcgcagcgcctggaggcgcag
cggcgcgcggaaatcctgcaagtggaactggccagcctggcactggaactggccgcttgg
ggtagcgacggagtgcgcttcgtcgatccgccgccggccggcgcactggccgccgcacgc
gaactgctgcagcggctcggcgcgctcgacgcgaaccagatcatcaccgcccatggccgg
cgcatgctggcactcggcacgcatccacgcctggcggcgatgctgttggccgccacggat
gcgcgcgcgcaagcattggcctgcgacctggccgcgctgatcgaagcgcgcgacccgctg
cgtcaaggcggcgatgcgctggcggcacgttggcgcgcgctggccgcattccgtcgcggc
cgcgtaccgcacgatgcccaccgtgatggtctggccgcaatcgacgccgccgccacacaa
tggcggcgacgtttgcgcggcaaggccgtcgcgccggagagcgtggacgcgcatgtgttg
ggcgacctgctcgcccacgcgtttcccgaccgtatcggcgtgcgccacccgcacgatccg
ctgcgctatctgctcgcaaacgggcgcagcgcgcgcctgttcgaacacagcgagctgcgc
ggcgaaccctggctggtcgccaccgaactgcgccacgaggccaaggacgcattgctgctg
cgcgccgcgccagtggacgaaacttctctgcgtgcacagtttccgcaacgattcgtgcag
caagacgtggtgcgctgggatgccgaacggcgtgcgctgagcgcgctgcgcgagagccgc
ttcgatcgcatcgtgctcgacagccgccctgccggtcgcgtcgacccggcgcatgcggcg
acggcactgaccgaagcggtgcgcgaactgggcttgcaagtcctgccgtggagcgaggac
ctgcggcaatggcgtgcgcgcgtggccgggctgcgcgcgtggatgccggaactggatctg
ccggatctgagcgatacagcgctgctggacagcctggaggactggctgcgtccggccttc
gtcggcaagacccggctcgacgcactcggcgaggacgcgctcgccgaggcattgaaaaca
cgcctgccgtgggaccgacgccaagccatcgaccgccacgcccccacgcgcatcgccgtg
ccatcgggcatggagcggcgcatcgactacgcgctggaccacgccggccaaccacagcca
ccggtactagcggtcaaactacaggaactgttcggactggccgacaccccacgtatcgcc
gacagtcgcgtgccgctggtactgcacctgctctcgcccggcggacgcccactgcaagtc
acccaagacctgcgcaacttctggtccaacacttacccggaagtgaaaaaggaaatgaag
ggccgttatccgcgccatccgtggccggacgacccctggaccgccaccgccagccaccgc
gctaaaccgcgcggcacttag
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