Xanthomonas sp. ISO98C4: AC801_11255
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Entry
AC801_11255 CDS
T06033
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xan
Xanthomonas sp. ISO98C4
Pathway
xan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AC801_11255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xan03019
]
AC801_11255
03009 Ribosome biogenesis [BR:
xan03009
]
AC801_11255
Enzymes [BR:
xan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AC801_11255
Messenger RNA biogenesis [BR:
xan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AC801_11255
Ribosome biogenesis [BR:
xan03009
]
Prokaryotic type
rRNA processing factors
AC801_11255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AZU30414
UniProt:
A0A3T0FZ66
LinkDB
All DBs
Position
2642390..2646049
Genome browser
AA seq
1219 aa
AA seq
DB search
MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE
RHGFLPLKEISRDYFQAGVDHNKATIRELLREGQEIVVQVDKEERGNKGAALTTFISLAG
RYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDL
DYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFM
KQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVN
SSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENRLQN
ALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIR
VAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPHYEV
TRLRENELGEESGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTSIKPSQPAPVREEAPA
PVAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAPESAPRPRQNDAGRNTRSER
GERGGQRRDGRDARSGGNGGNQQRGNGGNGNGANKERRDERRQPANGQGAQNGAQAQQQV
QAPKPPRNETQAPKQQPQQQKSKPQNQSPRPPRAPAQQDGAPAERQPRPARQDEGTAAAQ
TLTSTAATATTSSMVSAIADAAAPTNTQTNANEAVQAHPVDVTVIESTADRGADANATAP
AQDAAGDDAANGEGGSRRRRGRRGGRRRRRGAGANGEGGASVDGLEGDDLDSDTDNDLDG
DSEGDDAGAHAHVSGAPRAGQPEFDFDDDAPAPAVRAKSEPAAQAAAKPRPVPKERAEPQ
LGSDTASTTAPVSNAVPASQAPATKPVAKADTAQDRPAAPAVATDTPAKPAPAATASTAV
STDGEAAQAAEQRPAPVAQQASAAPAPVAASAPVASTPAPAVAPAAGTAPMSATTASAPA
VASPVTNDAATGSQHQPAPADAAAPAAEAEAAKADQQRRAVSADVATPSVQAAPVQTAPA
TPADDLPAPAAGTPASQAAVVTVTSSHAEQSVSQAPSAEAATTSTSTVVQASPGAETTPV
RKPYAPVQTTMLDALSPNDAAPAVSSANEPPAAPAAAQPSQADKPKSTVVVSEAVKPVAP
SDQAEQAQDDDSNKPRGDH
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggacggccagacc
ctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaacatctataag
ggccgcatcacccggctcgagccttccctggaagcggcgttcgtggattatggcgccgag
cgtcatgggttcctgccgttgaaggaaatttcccgcgactatttccaggccggcgtcgac
cataacaaggcgaccattcgcgaattgctgcgcgaaggccaggaaatcgtggtgcaggtc
gacaaggaagagcgtggcaacaagggcgctgccctgaccacgttcatctcgctggccggc
cgttacatggtgctgatgcccaattcgccgagcgccggtggcgtttcgcgccgcatcgag
ggcgaagaccgcgccgcgctgaaggaagcgctggacaagctcgatatccccgacgacatg
ggcgtgatcatccgcaccgccggtgtcggccgtgacgccgaagaactgcagtgggatctg
gactatctgctgcagacctggaaggcgattgccgaagctgcgctgagcaagccggcggcc
ttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactacctgcgcgcc
gacgtcggcgaaatcctggtcgacacgccggagttgtacgccgacgcccaggagttcatg
aagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgatattccgctg
ttcaatcgcttccagatcgaatcgcagatcgaaggcgcctatgagcgcaacgtgcgcctg
ccctcgggcggctccatcgtggtggaccagaccgaagcgctgaccgccgtcgacgtgaac
tcctcgcgcgccaccaagggcagcgatatcgaagaaaccgcgttccagaccaatctggaa
gcggccgaagaagtcgcacgccagttgcgcctgcgcgacctgggtggcctggtggtcatc
gacttcatcgacatggcctcgtccaagcaccagcgcgaagtcgaaaacaggctgcagaac
gcgctcaaatacgaccgcgcacgcgtgcagcttggccgtatctcgcgcttcggcctgatg
gaaatgagccgccagcgcctgcgtccgagcctgggcgaatccagccagatcgtctgcccg
cgttgcgacggccatggccgcatgcgcagtgtcgagtcgctgtcgctgtcgatcattcgc
gtggccgaagagcacgccatgaaggaaaacaccgggcaggtgctggtccaggccccggtg
gaaatcgccaactacctgctcaacgaaaagcgcagcgcgctgcgtgaaatcgagcagcgc
catgagtcgccgatcatcatcgtcgccgacgagcaactgcataccccgcactacgaagtc
acgcgcctgcgcgagaacgaactgggcgaagaaagcggcaagccgagctaccagcgcggc
accccgcgcaagttgccggtgcatgcgctgaccaaggcgcagttgaacatcccggccgcc
ccggcggtgacttcgatcaagcctagccagcccgctccggtgcgcgaagaggcccctgcc
ccggtcgcgcctgtcgcggcgccggcgccggtggtgaccgtgcccattccggcaccggtc
accggcgtggtgggctggctgaagcggatcttcggcggcgtcgagcccgttgccccggcc
ccggagtcggccccgcgtccgcgccagaacgatgctggccgcaatacccgcagcgaacgc
ggcgagcgtggcggtcagcgccgcgatggtcgcgatgcccgcagcggtggtaatggtggc
aaccagcaacgcggcaatggtggcaatggcaacggcgccaacaaggaacgccgcgatgaa
cgccgtcagcctgccaacggccagggtgcgcagaacggcgcacaggcacagcagcaggtg
caggcgcccaagccgccgcgcaatgaaacgcaggcgccaaagcagcagccgcagcagcag
aagtccaagccgcagaaccagagcccacgtccgccacgtgcgcctgcgcagcaggacggc
gccccagccgagcggcagccgcgtccggcccgccaggatgagggcacggcagcggcgcag
accctgacctccactgccgcaacggcaaccacgtcgagcatggtgtccgccattgccgat
gccgctgcacccaccaatacgcagaccaacgcgaatgaagcggtccaggcgcatccggtc
gatgtcaccgtgatcgaatccaccgctgatcgcggtgccgacgcaaatgcgactgcaccg
gcccaggatgccgcaggcgacgatgctgccaatggcgaaggcggaagccgtcgccgccgc
ggtcgtcgtggtggccgtcgtcgtcgtcgtggcgccggtgccaacggagaaggtggtgcc
agcgtcgatggcctggaaggcgacgatctggacagcgataccgacaacgatctcgatggc
gatagcgaaggcgacgacgccggtgctcacgcgcatgtttcgggcgcaccgcgcgccggc
cagcccgagttcgatttcgacgatgacgcaccggcaccggccgtgcgcgccaagtcggaa
ccggcagcccaggcagccgccaagccgcgtccggttcccaaggagcgtgcagagccacag
ctcggcagtgatacagcctcgaccaccgcgccggtttccaatgccgtgccggcatcgcaa
gcgccagcaacaaaacctgttgccaaggctgacaccgctcaggatcgccctgctgcgccc
gccgttgccacggacacacccgccaagcctgcgccggctgcgaccgcgtcgactgccgtc
agcaccgatggtgaggccgcacaggctgcagagcagcgccccgcgccggtcgcgcagcag
gcatccgctgccccggccccggttgccgcctccgcacctgtggcatccacgccggcacct
gcggtggctccagccgccgggacggcaccgatgtcggctaccacggcttcggcaccggct
gttgcatcgcctgtgaccaacgatgcggcgacaggcagccagcaccagcctgcgccggca
gatgcggctgcacctgccgccgaggccgaggccgcgaaggccgaccagcagcggcgcgct
gtgtcggcggacgtggcaacgccgtcggtgcaagcagcgccggtgcagacggcacctgca
acgcccgctgacgacctaccggcacctgcggcaggtacgcccgcgtcgcaggccgcagta
gtcacggtcacgtcgtcgcacgccgagcaatctgtttcgcaggcgccatcggccgaggcg
gcaacgacctcgacctcgacggttgtgcaggcaagcccaggggctgagaccacgcccgtg
cgcaagccgtatgctccggtacagaccaccatgctcgatgcgttgagcccgaacgatgct
gcgccagcagtctcctcggccaacgagcccccggcagcccctgcagcagcgcagccatcg
caggcagacaagccgaagtcgacggtggttgtgtccgaagcagtcaagccggttgcgcca
tcggaccaagccgagcaggcgcaggatgacgacagcaacaagccgcgtggcgatcactga
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