Xanthomonas sp. ISO98C4: AC801_13360
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Entry
AC801_13360 CDS
T06033
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xan
Xanthomonas sp. ISO98C4
Pathway
xan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AC801_13360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xan03019
]
AC801_13360
03016 Transfer RNA biogenesis [BR:
xan03016
]
AC801_13360
Enzymes [BR:
xan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AC801_13360
Messenger RNA biogenesis [BR:
xan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AC801_13360
Transfer RNA biogenesis [BR:
xan03016
]
Prokaryotic type
tRNA degradation factors
AC801_13360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
S1_2
KH_PNO1_2nd
DUF7680
Motif
Other DBs
NCBI-ProteinID:
AZU30809
LinkDB
All DBs
Position
complement(3107684..3109798)
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AA seq
704 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMN
PDIDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAG
TANAVLMVESEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNDG
MIAALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGE
LEYQTMRGSVLSSKVRIDGRALDTVRPISAEAGVLPRTHGSALFTRGETQAIVITTLGTA
RDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLE
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLS
DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH
ALTTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS
VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVQASAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcactcttgagacgggc
gaaatcgctcgccaggcaggcggcgccgtgatcgtcaagttcgacgacaccgtactgctg
gtcaccgccgtcgccgccaagagcgcgcgcgaagggcaggacttctttcctctgacggtc
gattatcaggagaagttctacgctggcggccgcatcccgggcggcttcttcaagcgcgaa
ggacgcgcgaccgagaaggaaacgttgatctcgcgcctgatcgatcgtccgatccgtccg
ctgttcccggaggactacaagaacgaagtgcagatcatcgccaccgtgatgtcgatgaat
ccggacatcgacggcgacatcgccgcgctgatcggcgcctcggccgcactgtcgctggcc
ggcacccccttcaagggcccgatcggcgccgccaaggtcggctacaagaatggcgaatac
atcctcaacccgaccgtgaccgagctgaaggattcgcagctggagctggtcgtggccggt
accgccaacgcggtgctgatggtcgagtccgaagccgagctgctgtccgaagaagtgatg
ttgggcgcagtgacgttcggtcatcgcgagatgcagaaggtcatcaacgtcatcaacgag
ctgaccgtcgaagccggcaccaagccgtccgactgggtggcaccggcgaagaacgacggc
atgatcgccgcactgaaggaagcggtgggcgaccagctcgcgtcggcattccaggtgcgc
gacaagttgcagcgccgcgatgcgatttcggcgatcaagaaggacgtgctgggcgccctg
gcgccgcgcgcgaccatcgaaggctgggctgccggtgatctggccaaggaattcggcgag
ctggaataccagaccatgcgtggttcggtgttgagcagcaaggtgcgcatcgacggccgt
gcactggacaccgtgcgtccgatcagcgccgaggccggcgtgttgccgcgtacccatggc
tcggcgctgtttacccgcggcgagacgcaggcgatcgtgatcaccacgctgggcaccgcg
cgcgacggtcaggtcatcgacgcagtgtcgggcgagtacaaggaaaacttcctgttccat
tacaacttccctccgtattcggtgggcgagtgcggtcgtttcggtgcgccaaagcgtcgc
gaaatcggccacggccgcctggccaagcgcggcgtgctggccgtgatgccgactctggaa
gaattcccgtacaccattcgcgtggtctcggaaatcaccgagtccaacggttcttcctcg
atggcttcggtctgcggcagctcgctggcgctgatggatgccggcgtgccgatcaaggcg
ccggtcgcaggtatcgcgatgggtctggtcaaggaaggcaatgacttcgtcgtgctctcc
gacatcctgggtgacgaagatcacctcggcgacatggacttcaaggtggccggtactgcc
gaaggcgtgtccgcgctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
aagcaggcattgcagcaggccaaggctggccgtctgcacatcctgggcgagatggcgcat
gcgctgaccaccccgcgtcaggagctgagcgactacgcgccgcgcctgctgaccatcaag
atccacccggacaagatccgcgaagtgatcggcaagggtggctcgaccatccaggccatc
accaaggaaaccggcacgcagatcgacatccaggacgatggcacgatcatcatcgcttcg
gtcaacgcgattgccgcgcaggctgccaagtcgcgcatcgagcagatcacctcggacgtg
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggtgcgttcgtc
accatcctgccgggcaaggacggcctggtgcacgtgtcgcagatttccagcgagcgcgtg
gagaaggtcggcgacaagttgaaggaaggcgatctggtccgcgtcaaggtgctggaagtg
gacaagcagggccgcatccgtctgtcgatcaaggcagtggaagaaggcgaaggcgtgcag
gcgtcggcggagtaa
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