Xanthomonas sp. ISO98C4: AC801_19660
Help
Entry
AC801_19660 CDS
T06033
Name
(GenBank) RTCB protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xan
Xanthomonas sp. ISO98C4
Brite
KEGG Orthology (KO) [BR:
xan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xan03016
]
AC801_19660
Enzymes [BR:
xan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AC801_19660
Transfer RNA biogenesis [BR:
xan03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AC801_19660
Prokaryotic type
tRNA splicing ligases
AC801_19660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Gam
Motif
Other DBs
NCBI-ProteinID:
AZU32010
LinkDB
All DBs
Position
4587547..4588770
Genome browser
AA seq
407 aa
AA seq
DB search
MSTSQHFEFLHAEGSSTPIKGWVRGVPLEEQAHAQLRNIAAVPFVGPWVAVMPDVHLGKG
ATVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRANDLPDSLAQLRSSIERSVPVGNGRG
GEHRKLPDSIQTRIAQSGLVQRLDAIKQQHKRIRTDKLDCQIGTLGGGNHFIEICLDETD
AVWVMLHSGSRGTGNLIGTYFIERTREQLAHRVLGFHLPDKDLAFFMQGEPLFDEYVEAV
SWAQDYARENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHGGEELLITRKGA
VSARAGELGIIPGSMGTRSHIVRGLGNADSFHSCSHGAGRVMSRTAARAQITLAQHREAT
AHVECRKDAAVIDESPAAYKSIDAVMAAQRDLVEVLHTLRQVVCIKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatcacaacactttgaatttctgcacgccgaaggcagcagcaccccgatcaag
ggctgggtacgcggcgtgccgctggaagagcaggcgcatgcgcagctgcgcaatatcgca
gcggtcccgtttgtcggtccgtgggtcgcggtgatgccagacgtgcatctgggcaaaggc
gcaaccgtgggctcggtgattccgacccgtggcgccatcatcccggcggcggtcggcgtg
gatatcggctgcggcatggcggcggtgcgcaccacgctgcgcgccaacgacctgcccgac
agtctggcgcagctgcgttccagcatcgagcgcagcgtgccggtgggcaacggccgtggc
ggcgagcaccgcaagctgccggacagcatccagacccgcatcgcgcagtccgggctggtg
cagcgtctggacgccatcaagcagcagcacaagcgcatccggaccgacaagctggactgc
cagatcggcacgctgggtggcggcaaccatttcatcgagatctgcctggacgaaaccgat
gcggtctgggtgatgctgcacagcggttcgcgcggcaccggcaacctgatcggcacgtat
ttcatcgagcgcacgcgtgagcaactggcgcatcgcgtattgggttttcatctgcccgac
aaggacctggccttcttcatgcagggcgagcctttgttcgacgagtatgtcgaagcggtg
tcgtgggcgcaggattacgcccgcgaaaatcgcgaggcgatgatggcgcgcgtgctggcc
gagatgcgtcaccgcttgcccaaattccagctggaaaagctcgcagtcaattgccaccac
aactatgtgcaaaaggaaacgcacggtggcgaggaattgttgatcacccgcaagggcgcg
gtcagcgctcgtgccggcgagctgggcatcattccgggcagcatgggcacgcgcagccac
attgtgcgcgggttgggcaacgccgacagtttccacagctgcagccacggcgcagggcgc
gtgatgagcaggaccgctgcacgcgcgcaaatcaccctggcacagcatcgcgaggccacc
gcacatgtggaatgccgcaaggacgcggcagtgatcgacgagtcgcctgccgcgtacaag
tccatcgatgcagtgatggcggcgcagcgggatctggtcgaggtgctgcacaccttgcgc
caggtggtgtgcatcaagggatag
DBGET
integrated database retrieval system
