Xanthomonas axonopodis Xac29-1: XAC29_14575
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Entry
XAC29_14575 CDS
T02500
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xao
Xanthomonas axonopodis Xac29-1
Pathway
xao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XAC29_14575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xao03400
]
XAC29_14575
Enzymes [BR:
xao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XAC29_14575
DNA repair and recombination proteins [BR:
xao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XAC29_14575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
ERCC3_RAD25_C
AAA_16
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AGH78346
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All DBs
Position
3366145..3369609
Genome browser
AA seq
1154 aa
AA seq
DB search
MPSPTFPSPPLPKSGQLRAYWRAPSSPTALAWSIARAAEAHAGPLLVIARDNQSAHQIEA
DLHALLGEHSALPVVPFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVIVPVQTL
LQQLAPLSYIVGGSFDLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFP
MGADTPLRVELLDEDIDSIRVFDPESQRSLDKVDAVKMLPGREVPMDDASIERVLACLRE
RFDVDTRRSALYQDLKSGLAPSGIEYYLPMFFAKTATLFDYLDKRVLPVIATGVSNAADA
FWTQAQNRYEQRRHDVERPLLPPDELYQSPDALRERLNKLARIEVWASDHARIDEAAPLG
DQPLPPLPVAAKDAPAGQALASFLSHYPGRVLVAADSAGRREALMEVLAAAQLKPELVAD
VPAFLAGTLRFGITVAPLEDGFALDQPQIALLTERQLFPERANQPRRARRVGREPEAIIR
DLGELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVAQLHLISRY
SGASAETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRRARAGLALQVDRAMYEP
FAAGFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQV
AVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHR
LLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRD
LSIIATPPPNRLAVQTFITAWDNTLLREAFQRELSRGGQLYFLHNDVESIVRMQRDLSEL
VPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFG
LAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFTLATHDLEI
RGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDAGEEVRGADVELHVASL
IPEDYLPDVHTRLTLYKRISSARDTDALRELQVEMIDRFGLLPDPVKHLFAIAELKLQAN
ALGVRKLDLGENGGRLVFEVKPAIDPMTIIQMIQKQPKIYTMDGPDKLRIKLPMPEGADR
FNAARGLLAALSPG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgcctaccttcccctctccgccgctgcccaagtccggccagctccgcgcctac
tggcgcgcgccatcctcaccgactgcgctggcatggtcgattgcgcgggcagccgaggcg
catgccggcccgctgctggtgatcgcccgcgataaccagagcgcgcaccagatcgaagcc
gacctgcatgccttgctcggcgaacactcggcgctgccggtggtgccgtttcccgattgg
gaaaccctgccctacgaccagttcagcccgcaccccgaaatcatcagccagcgtctggcc
gccctgcaccgcctgcccggcctgacccgcggcgtggtgatcgtgccggtgcagaccttg
ctgcagcagctggctccgctgagctacatcgtcggcggcagtttcgatctcaccgttggc
cagcggctggatctggatgcggaaaagcgccgcctggaaagcgccggctaccgcaatgtc
ccgcaggtgatggacccgggcgactttgccgtccgcggcggcctgctcgacgtgttcccg
atgggcgcggacacgccattgcgggtcgagctgctggatgaggatatcgattcgatccgc
gtgttcgacccggaatcgcagcgttcgctggacaaggtggacgcggtcaagatgctgcct
ggccgcgaagtaccgatggacgatgccagcatcgagcgcgtgctggcctgcctgcgcgaa
cgcttcgacgtggatacccggcgcagcgcgctgtaccaggacctgaaatccgggctggcg
ccgtcgggcatcgagtattacctgccgatgttcttcgccaagaccgcaacgctgttcgat
tatctggacaagcgggtactgccggtgatcgccactggcgtgtccaatgccgccgacgca
ttctggacccaggcgcagaaccgctatgaacagcgccgccacgatgtggaacgcccgctg
ctgccgccggacgagctgtaccaatcgccggatgcgctgcgcgagcggctcaacaagctg
gcgcgtatcgaagtgtgggccagcgatcatgcgcgcatcgacgaggccgctccgctcggc
gaccaaccgttgccgccgctgccggtggctgccaaagacgctcccgccggtcaggcgctc
gcatcgttcctgagccattacccgggccgcgtgctggtcgctgccgattcggccggccgc
cgcgaagccttgatggaagtgctggccgccgcgcagttgaagccggagctggtcgccgat
gtgccggcgttcctggccgggacgctgcggttcggcattaccgtggcgccgctggaagac
ggctttgcactggatcagccgcagattgcgctgctgaccgaacgccagctgttcccggaa
cgggccaaccagccgcgccgcgcgcgccgggtcggacgcgagccggaagcgatcatccgc
gatctgggcgagctgtccgaaggcgcaccgatcgtgcacgaggaccacggcgtcggccgc
taccgcggcctgatcgtgctcgatgccggcggcatgcccggcgaattcctggaaatcgaa
tacgccaagggcgaccggctgtatgtgccggtggcgcagctacatctgatcagccggtat
tccggcgcctcggccgagaccgcgccgctgcactcactgggcggcgagcaatggaccaag
gccaagcgcaaggcggccgaaaaggtccgcgacgtcgccgccgaattgctggaaatccag
gcgcgccgacgcgcgcgcgcgggtctggcgttgcaggtggaccgggcgatgtacgagccg
ttcgcggccggatttccgttcgaagaaaccggcgaccagcttgccgccatcgatgcgacg
ctgcgcgatctgggcagcagccaaccgatggaccgtgtggtgtgcggcgacgtcggtttc
ggcaagaccgaggttgcggtgcgcgccgccttcgccgccgccagcgccggcaagcaggtc
gccgtgctggtgccgaccacgttgctggccgaacagcattaccgcaatttccgcgaccgg
ttcgccgattacccgatgaaggtggaagtgctttcccgcttcaagagcaccaaggaaatc
aaggcagaactggaaaaggtcgccagcggcgacatcgacgtgatcatcggcacgcaccgg
ttgttgcagccggacgtgaagttcaaggatctcgggctggtggtcgtcgacgaagaacaa
cgcttcggcgtgcggcaaaaagaagcgctcaaggcgatgcgtgccaacgtgcatctgctc
acgctcaccgccacaccgatcccgcgcacgctcaacatggccatggcaggcctgcgcgat
ctgtcgatcatcgcgaccccgccgccgaaccgcctggcggtgcagaccttcattaccgcg
tgggacaacacactgctgcgcgaggccttccagcgcgaactcagtcgcggtggtcagctg
tatttcctgcataacgatgtggaaagcatcgtgcgcatgcagcgtgatctctccgagctg
gtgccggaagcgcgcatcggcatcgcgcatgggcagatgcccgagcgcgagctggaacgg
gtgatgctggatttccagaagcagcgcttcaatgtcttgctgtcgaccacgatcatcgaa
tcgggcatcgacattcccaatgccaacaccatcatcatcaaccgcgccgaccgctttggc
ctggcgcagctgcatcagttgcgcggccgcgtgggtcgctcgcatcaccgcgcctacgcg
tacctggtggtgcctgaccggcgctcgatgacctccgatgcagaaaagcgcctggaagcg
atcgcctcgatggacgagctcggcgccggcttcaccctggccacgcacgatctggaaatc
cgcggcgccggcgaattgctgggcgaagaccagagcggccagatggccgaggtcggtttc
agcctgtataccgaactgctcgagcgcgcagtgcgcagcatccgccagggcaagctgccc
gacctggacgccggcgaagaagtgcgcggcgccgacgtcgagttgcatgtggcctcgctg
attcccgaggattatctgcccgacgtgcatacgcgcctgaccttgtacaagcgcatttcc
agcgcacgcgacaccgatgcgctacgcgaactgcaggtggagatgatcgaccgcttcggc
ctgctgccggacccggtcaagcatctgttcgccattgccgagctcaagctgcaggccaac
gcgttgggcgtgcgcaagctggatctgggcgaaaacggcgggcggctggtgttcgaggtc
aagccggcgatcgacccgatgaccatcatccagatgatccagaaacagccgaagatctac
acgatggacggcccggacaaactgcgcatcaagctgccgatgcccgaaggcgccgaccgt
ttcaatgccgcacgcggcttgttggcggcgttgtcgccggggtaa
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